PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016477503.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family LBD
Protein Properties Length: 197aa    MW: 21491.3 Da    PI: 6.4872
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016477503.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26096.92.1e-302104198
          DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                     +C++C+vlrr+C+++C+l+ ++     p +q++++ +v k+FG+s ++ +++a+pe++r+++++sl++eA+ r+ +Pv Gavg++++++++++q+
  XP_016477503.1   2 SCNGCRVLRRRCSDNCTLRACLdgiddPRAQANATLFVSKFFGRSDLMAFIAAVPENRRPALFKSLLFEACGRTVNPVTGAVGLLSTGNWHVCQK 96 
                     6********************************************************************************************** PP

          DUF260  91 kaelallk 98 
                     ++e++l++
  XP_016477503.1  97 AVETVLVG 104
                     **998876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089118.0981107IPR004883Lateral organ boundaries, LOB
PfamPF031951.7E-262101IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MSCNGCRVLR RRCSDNCTLR ACLDGIDDPR AQANATLFVS KFFGRSDLMA FIAAVPENRR  60
PALFKSLLFE ACGRTVNPVT GAVGLLSTGN WHVCQKAVET VLVGGNLRPV FAGILTPYMN  120
ETFESFRCGG AWDIPNQFSN KSGSFTDGSD HIDTTEWVGL EKRWNTTSSI GSETELSDVS  180
LGLDSGNKEP KLLNLFV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009606111.11e-144PREDICTED: LOB domain-containing protein 38-like isoform X1
RefseqXP_016477503.11e-144PREDICTED: LOB domain-containing protein 38-like isoform X1
SwissprotQ9SN232e-53LBD38_ARATH; LOB domain-containing protein 38
TrEMBLA0A1S4AM471e-143A0A1S4AM47_TOBAC; LOB domain-containing protein 38-like isoform X1
STRINGXP_009606111.11e-144(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9662490
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49940.18e-56LOB domain-containing protein 38