PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016476789.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family LBD
Protein Properties Length: 224aa    MW: 24465.7 Da    PI: 6.881
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016476789.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260100.21.9e-312103197
          DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                     +C++C+vlr++C+++C+l+p++     +++q +++ +v+k+FG++ ++++++a+pe++r+ +++sl+yeA  r+ +Pv+Gavg++++++++++q+
  XP_016476789.1   2 SCNGCRVLRKGCSENCILRPCLqwietAESQGHATVFVAKFFGRAGLMSFISAVPENQRPSLFQSLLYEAAGRTVNPVNGAVGLLWTGNWHVCQA 96 
                     6*********************9999777889*************************************************************** PP

          DUF260  91 kaelall 97 
                     ++e++l+
  XP_016476789.1  97 AVETVLR 103
                     *999876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089120.2131107IPR004883Lateral organ boundaries, LOB
PfamPF031958.9E-272101IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSENCILR PCLQWIETAE SQGHATVFVA KFFGRAGLMS FISAVPENQR  60
PSLFQSLLYE AAGRTVNPVN GAVGLLWTGN WHVCQAAVET VLRGGALRPI PDFLGASLDI  120
DEGSECTDVF KLEHPSQNNM QPKVQKRRRF PEEASKVLQL ADLDLSLTPG FQSRKVISHA  180
LPENQRPGTP SMNSEESGTT TCFESGTVTG NQQGNEPKLL SLFN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1141147PKVQKRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016476789.11e-166PREDICTED: LOB domain-containing protein 37-like
SwissprotQ9FN113e-82LBD37_ARATH; LOB domain-containing protein 37
TrEMBLA0A1S4AJK01e-165A0A1S4AJK0_TOBAC; LOB domain-containing protein 37-like
STRINGXP_009626676.11e-165(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9662490
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67420.11e-84LOB domain-containing protein 37
Publications ? help Back to Top
  1. Menz J,Li Z,Schulze WX,Ludewig U
    Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition.
    Plant J., 2016. 88(5): p. 717-734
    [PMID:27419465]