PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016476062.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family LBD
Protein Properties Length: 198aa    MW: 21776.5 Da    PI: 4.9612
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016476062.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260120.77.8e-3881081100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                     +C aCk+lrr+Ca++C++apyf+ eq +++fa+vhk+FGasnv+kll +lp + r++a+ ++ yeA ar++dP+yG+vg+i++l+qq+++l +e+
  XP_016476062.1   8 SCGACKFLRRRCANECIFAPYFCYEQaTNHFAAVHKVFGASNVSKLLLHLPLHCRSEAAVTMSYEALARMQDPIYGCVGHIFELEQQVASLVEEI 102
                     6***********************9978******************************************************************9 PP

          DUF260  95 allkee 100
                     + + ++
  XP_016476062.1 103 EITAKQ 108
                     998876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.5087109IPR004883Lateral organ boundaries, LOB
PfamPF031955.5E-358105IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MAGPGGSSCG ACKFLRRRCA NECIFAPYFC YEQATNHFAA VHKVFGASNV SKLLLHLPLH  60
CRSEAAVTMS YEALARMQDP IYGCVGHIFE LEQQVASLVE EIEITAKQMA SYAGEVHMEN  120
TINTLQFSLE CNNMNVGNNH VNHSVTSLAH VNDTSANEAF ITQINAQLPE INGFDNLFST  180
TFFDFVFEGP DPICTSNP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-3341166119LOB family transfactor Ramosa2.1
5ly0_B2e-3341166119LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. {ECO:0000269|PubMed:17259263}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016476062.11e-147PREDICTED: LOB domain-containing protein 33-like
SwissprotQ9LHS83e-52LBD33_ARATH; LOB domain-containing protein 33
TrEMBLA0A1S4AH981e-145A0A1S4AH98_TOBAC; LOB domain-containing protein 33-like
STRINGXP_009600628.11e-145(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA127691521
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06080.11e-54LOB domain-containing protein 33
Publications ? help Back to Top
  1. Bargmann BO,Birnbaum KD,Brenner ED
    An undergraduate study of two transcription factors that promote lateral root formation.
    Biochem Mol Biol Educ, 2014 May-Jun. 42(3): p. 237-45
    [PMID:24615800]