PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016475612.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 89aa    MW: 10538.1 Da    PI: 10.4628
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016475612.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding346.8e-11348346
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                     +WTt   +++ +a +++  +   +W+ Iar +g g+++++++ ++  
   XP_016475612.1  3 SWTTKQKKRFEEALALYDRDtpdRWHNIARSVG-GKSAEEVRRHYEL 48
                     6*****************99*************.***********76 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007174.8E-7152IPR001005SANT/Myb domain
PROSITE profilePS5129312.608154IPR017884SANT domain
CDDcd001672.47E-7350No hitNo description
PfamPF002492.4E-8348IPR001005SANT/Myb domain
SuperFamilySSF466891.88E-12356IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.3E-5356IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 89 aa     Download sequence    Send to blast
MASWTTKQKK RFEEALALYD RDTPDRWHNI ARSVGGKSAE EVRRHYELLL KDIMQIKNDQ  60
VPLPKYKPAQ TNVRGYANEQ RLLKNLKLQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-254891193RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009607881.16e-61PREDICTED: protein RADIALIS-like 5
RefseqXP_016475612.16e-61PREDICTED: protein RADIALIS-like 5
SwissprotQ1A1732e-31RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A1S4AG041e-59A0A1S4AG04_TOBAC; protein RADIALIS-like 5
STRINGXP_009607881.12e-60(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20224231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.29e-34RAD-like 6