PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016475412.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MIKC_MADS
Protein Properties Length: 272aa    MW: 30847.9 Da    PI: 5.9102
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016475412.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF91.73.6e-29959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    k ien  nrqvtfskRr+g+lKKA+ELSvLCdaevaviifsstgkl+e++s
  XP_016475412.1  9 KLIENVNNRQVTFSKRRAGLLKKANELSVLCDAEVAVIIFSSTGKLFEFAS 59
                    569**********************************************86 PP

2K-box58.23.5e-20971889100
           K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                     l+++ +++ q+e++ Lk+e+++L+ +q +llG+dL+ L l+eL+ Le+qL+++l  i+++K+ell++q+e+++++e+++  e ++Lr+++ee
  XP_016475412.1  97 LQTHVQKQEQKEVESLKDELSKLKIKQLRLLGKDLNGLGLNELRLLEHQLNEGLLAIKDRKEELLIQQLENSRRQEERAVLESETLRRQVEE 188
                     6666678899*******************************************************************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006632.043161IPR002100Transcription factor, MADS-box
SMARTSM004322.7E-41160IPR002100Transcription factor, MADS-box
CDDcd002651.63E-40278No hitNo description
SuperFamilySSF554551.57E-32275IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004049.1E-29323IPR002100Transcription factor, MADS-box
PfamPF003194.6E-261157IPR002100Transcription factor, MADS-box
PRINTSPR004049.1E-292338IPR002100Transcription factor, MADS-box
PRINTSPR004049.1E-293859IPR002100Transcription factor, MADS-box
PfamPF014861.2E-1498186IPR002487Transcription factor, K-box
PROSITE profilePS5129712.605102192IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010047Biological Processfruit dehiscence
GO:0010262Biological Processsomatic embryogenesis
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048577Biological Processnegative regulation of short-day photoperiodism, flowering
GO:0060862Biological Processnegative regulation of floral organ abscission
GO:0060867Biological Processfruit abscission
GO:0071365Biological Processcellular response to auxin stimulus
GO:2000692Biological Processnegative regulation of seed maturation
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MGRGKIDIKL IENVNNRQVT FSKRRAGLLK KANELSVLCD AEVAVIIFSS TGKLFEFAST  60
SMKQTLSRYN RCVASTEISA IERKSEDNQQ PQPQAQLQTH VQKQEQKEVE SLKDELSKLK  120
IKQLRLLGKD LNGLGLNELR LLEHQLNEGL LAIKDRKEEL LIQQLENSRR QEERAVLESE  180
TLRRQVEELR GLFPLSASLP PPYLEYHPLE KKYPIIKEGE ESLDSDTACE DGVDDEDSNT  240
TLQLGLPTIG RKRKKPEQES PSSNSENQVG SK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P2e-21170170Myocyte-specific enhancer factor 2B
1tqe_Q2e-21170170Myocyte-specific enhancer factor 2B
1tqe_R2e-21170170Myocyte-specific enhancer factor 2B
1tqe_S2e-21170170Myocyte-specific enhancer factor 2B
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1250254RKRKK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00508DAPTransfer from AT5G13790Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY3705260.0AY370526.1 Petunia x hybrida MADS-box protein 9 (PMADS9) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016475412.10.0PREDICTED: agamous-like MADS-box protein AGL15 isoform X1
SwissprotQ388472e-73AGL15_ARATH; Agamous-like MADS-box protein AGL15
TrEMBLQ6UGQ91e-176Q6UGQ9_PETHY; MADS-box protein 9
STRINGSolyc01g087990.2.11e-166(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA87752226
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13790.18e-56AGAMOUS-like 15