PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016474237.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family LBD
Protein Properties Length: 213aa    MW: 23178.2 Da    PI: 8.0083
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016474237.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260124.84.4e-39281281100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                     +C aCk+lrrkC+++C++apyf ++q +++fa+vhk+FGasn +kll ++p ++r da+ +l+yeA ar+rdP+yG+v++i++lqqq+ +l+ael
  XP_016474237.1  28 PCGACKFLRRKCVRGCIFAPYFDSDQgTAHFAAVHKVFGASNASKLLLRIPAHKRLDAVVTLCYEALARVRDPIYGCVAHIFTLQQQVVTLQAEL 122
                     7***********************9989******************************************************************* PP

          DUF260  95 allkee 100
                     a+++++
  XP_016474237.1 123 AYVQAR 128
                     **9976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.74427129IPR004883Lateral organ boundaries, LOB
PfamPF031951.4E-3728126IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MNGGCGGADR EYNNNNNNNV VGGGGGGPCG ACKFLRRKCV RGCIFAPYFD SDQGTAHFAA  60
VHKVFGASNA SKLLLRIPAH KRLDAVVTLC YEALARVRDP IYGCVAHIFT LQQQVVTLQA  120
ELAYVQARLS TLPHLPMRQS PITPTGLQSS SDIFCTTSSI SSSSNNMEYP QFDITAGLSD  180
SFDEKELENF ELHTLARELV SRHLPGVRFR PSP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A4e-37241227104LOB family transfactor Ramosa2.1
5ly0_B4e-37241227104LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016474237.11e-159PREDICTED: LOB domain-containing protein 19-like
SwissprotO813223e-64LBD31_ARATH; LOB domain-containing protein 31
TrEMBLA0A1S4AC561e-157A0A1S4AC56_TOBAC; LOB domain-containing protein 19-like
STRINGXP_009628901.11e-158(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45410.16e-62LOB domain-containing protein 19