PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016473084.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 81aa    MW: 8745.76 Da    PI: 8.9667
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016473084.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.43.8e-09855246
                     SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                     g+WT+   + + +a + + ++   +W+ +a+ +g g+t+ ++k ++  
   XP_016473084.1  8 GSWTAKQNKAFEKALAVYDKDtpdRWSNVAKAVGGGKTAAEVKRHYEV 55
                     79*******************************************975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.783257IPR017877Myb-like domain
SMARTSM007177.3E-8659IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.1E-5656IPR009057Homeodomain-like
SuperFamilySSF466891.3E-12865IPR009057Homeodomain-like
PfamPF002498.7E-7854IPR001005SANT/Myb domain
CDDcd001673.25E-6957No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 81 aa     Download sequence    Send to blast
MSSSQAQGSW TAKQNKAFEK ALAVYDKDTP DRWSNVAKAV GGGKTAAEVK RHYEVLVHDI  60
MFIENGGVPF PIYTGGGTTN N
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A8e-31176178RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016473084.15e-55PREDICTED: protein RADIALIS-like 1
SwissprotF4JVB86e-32RADL1_ARATH; Protein RADIALIS-like 1
TrEMBLA0A1S4A9321e-53A0A1S4A932_TOBAC; protein RADIALIS-like 1
STRINGXP_009618694.11e-36(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20224231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.14e-24RAD-like 1
Publications ? help Back to Top
  1. Zhang M, et al.
    ROOT HAIR DEFECTIVE3 family of dynamin-like GTPases mediates homotypic endoplasmic reticulum fusion and is essential for Arabidopsis development.
    Plant Physiol., 2013. 163(2): p. 713-20
    [PMID:23922269]