PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016471198.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 96aa    MW: 11026.5 Da    PI: 9.0072
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016471198.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.91.1e-08753144
                     TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                     r++WT++  +l+ +a + + ++   +W  +ar +g g++  ++k ++
   XP_016471198.1  7 RNSWTPQQNKLFERALAHFDKDtpdRWQNVARAVGGGKSVDEVKRHY 53
                     789*******************************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129310.02561IPR017884SANT domain
SMARTSM007173.6E-7659IPR001005SANT/Myb domain
PfamPF002491.3E-6753IPR001005SANT/Myb domain
SuperFamilySSF466894.61E-12865IPR009057Homeodomain-like
CDDcd001671.80E-4953No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 96 aa     Download sequence    Send to blast
MALNSIRNSW TPQQNKLFER ALAHFDKDTP DRWQNVARAV GGGKSVDEVK RHYEILIEDL  60
RRIESGLVPL PTYRNGGTIG VAADEEQRLL RYLNLH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A5e-2710891187RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016471198.12e-66PREDICTED: protein RADIALIS-like 4
SwissprotQ1A1734e-29RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A1S4A3I14e-65A0A1S4A3I1_TOBAC; protein RADIALIS-like 4
STRINGXP_009602671.15e-65(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20224231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.11e-31RAD-like 6