PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016468095.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family G2-like
Protein Properties Length: 280aa    MW: 30984.4 Da    PI: 8.479
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016468095.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like109.61.5e-344498155
         G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                    kprlrWt+eLHerFv+av+qLGG++kAtPkti+++m+vkgLtl+h+kSHLQkYRl
  XP_016468095.1 44 KPRLRWTTELHERFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRL 98
                    79****************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.80341101IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.1E-334199IPR009057Homeodomain-like
SuperFamilySSF466891.51E-1743101IPR009057Homeodomain-like
TIGRFAMsTIGR015571.6E-244499IPR006447Myb domain, plants
PfamPF002496.8E-94697IPR001005SANT/Myb domain
PfamPF143791.5E-11151177IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MYSTLPIRNL GGSGDYFNNI HNSVSIDGTN LPGDACLVLT TDPKPRLRWT TELHERFVDA  60
VTQLGGPDKA TPKTIMRTMG VKGLTLYHLK SHLQKYRLGK QSAKEATDNS KDGNEELFIK  120
YSSFLRIAHV VCARANLLPQ LGPTATFVLS KVQRRLQLRI EAQGKYLQSI LEKACKAFSS  180
QSIESNGLEV NREELSELAM KVANDCEGIV NVPSLHEIAP SIENKNACHV PARLGDCLLD  240
DCFPSNGIGD LKKRPRAFAN ANGLPMESNT RQVEWMMSNT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A2e-2044100157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B2e-2044100157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C2e-2044100157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D2e-2044100157Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator (PubMed:26586833). Acts redundantly with PHR1 as a key component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). {ECO:0000269|PubMed:26586833}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in roots by low Pi. {ECO:0000269|PubMed:26586833}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754484e-36HG975448.1 Solanum pennellii chromosome ch09, complete genome.
GenBankHG9755214e-36HG975521.1 Solanum lycopersicum chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016468095.10.0PREDICTED: myb family transcription factor APL-like
SwissprotQ94A577e-86PHL2_ARATH; Protein PHR1-LIKE 2
TrEMBLA0A1S3ZUJ70.0A0A1S3ZUJ7_TOBAC; myb family transcription factor APL-like
STRINGXP_009619230.11e-173(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37912344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24120.26e-90G2-like family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]