PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016465672.1
Common NameCEF1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 387aa    MW: 42843.2 Da    PI: 4.4306
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016465672.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.95.9e-19116165255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     +y+G+r+++ +g+W+AeIrdp++     r++lg+f taeeAa+a++  +++++g
  XP_016465672.1 116 QYRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTAEEAARAYDVEARRIRG 165
                     69*******.**********954...4************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003803.1E-36116179IPR001471AP2/ERF domain
PROSITE profilePS5103224.105116173IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.4E-32116175IPR001471AP2/ERF domain
CDDcd000183.20E-33116174No hitNo description
SuperFamilySSF541712.68E-22116175IPR016177DNA-binding domain
PRINTSPR003671.2E-11117128IPR001471AP2/ERF domain
PfamPF008479.3E-12117165IPR001471AP2/ERF domain
PRINTSPR003671.2E-11139155IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0070483Biological Processdetection of hypoxia
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MCGGAIISDY IAPSRTSRRL TAELLWGRSD LSNKQKNPNN YHSKPLRSQV VDLDDDFEAD  60
FQDFKDFSDD EDVQVDVKPF AFSASKNSNV EGSKSVKTDD SDKDADRSSK RKRKNQYRGI  120
RQRPWGKWAA EIRDPRKGVR VWLGTFNTAE EAARAYDVEA RRIRGNKAKV NFPDEAPVPA  180
SRRTVKVNPQ KVLPKEILDS VQPDSTIINN MEDCCYDSLG FLEEKPMTKQ FGCEDGSSAS  240
GDTGFGSFAP SAGTDIYFNS DVGSNSFDCS DFGWGEPCAR TPEISSVLSA VIESNESQLV  300
EDDTSPMKKL KSSPINPVAD DGNTANKLSE ELSAFETQMK FLQIPYLEGN WDASVDTFLN  360
SSATQDGDNA MDLWSFDDVP SLLGGVF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A8e-22116173260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00204DAPTransfer from AT1G53910Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY2860100.0AY286010.1 Nicotiana tabacum callus-expressing factor (CEF1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001312385.10.0ethylene-responsive transcription factor RAP2-12-like
RefseqXP_016465672.10.0PREDICTED: ethylene-responsive transcription factor RAP2-12-like
TrEMBLQ7Y1W20.0Q7Y1W2_TOBAC; Callus-expressing factor
STRINGXP_009775920.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14462466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53910.31e-61related to AP2 12
Publications ? help Back to Top
  1. Lee JH, et al.
    Functional characterization of NtCEF1, an AP2/EREBP-type transcriptional activator highly expressed in tobacco callus.
    Planta, 2005. 222(2): p. 211-24
    [PMID:15918028]