PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016463602.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family LBD
Protein Properties Length: 245aa    MW: 27324.2 Da    PI: 7.1662
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016463602.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26092.16.8e-294106198
          DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                     +C++C+vlr++C+++C l+p++     p++q++++ +++k++G++ + +l+++ p++ r+++++sl+yeA+ r+ +Pv+G+vg++ ++++  +q+
  XP_016463602.1   4 SCNGCRVLRKGCSENCSLRPCLqwirsPDSQANATVFLAKFYGRAGLFNLINSGPDHLRPAIFRSLLYEACGRIINPVHGSVGLMCSGNWSRCQE 98 
                     6********************************************************************************************** PP

          DUF260  91 kaelallk 98 
                     ++e +l +
  XP_016463602.1  99 AVESVLKG 106
                     99988765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089116.1523109IPR004883Lateral organ boundaries, LOB
PfamPF031953.8E-234102IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MRMSCNGCRV LRKGCSENCS LRPCLQWIRS PDSQANATVF LAKFYGRAGL FNLINSGPDH  60
LRPAIFRSLL YEACGRIINP VHGSVGLMCS GNWSRCQEAV ESVLKGSTIM QIPINDDNNT  120
DNQESHQIMP LKGCDIRHIS KNNSTDIHQV VKTRNRFKRK AKVETTATEY MINEPGPLKF  180
SITGWDFDHH MEEDELKRAP SHDSFSVETV EPSLVNRVEP AVLPVKLEEG GDVGLELTLG  240
LMSPA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016463602.10.0PREDICTED: LOB domain-containing protein 40-like
SwissprotQ9M8867e-70LBD41_ARATH; LOB domain-containing protein 41
TrEMBLA0A1S3ZH710.0A0A1S3ZH71_TOBAC; LOB domain-containing protein 40-like
STRINGXP_009586694.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8862494
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.13e-72LOB domain-containing protein 41