PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016462488.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 89aa    MW: 9925.98 Da    PI: 8.9783
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016462488.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.54.7e-111054244
                     SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                     g+WT+e  + + +a + + ++   +W+ +ar +g g+t++++k ++
   XP_016462488.1 10 GSWTAEQNKAFEKALAVYDKDtpdRWSNVARAVG-GKTAEEVKRHY 54
                     89********************************.**********9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007174.9E-9860IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-51055IPR009057Homeodomain-like
PROSITE profilePS500906.8881058IPR017877Myb-like domain
PfamPF002493.0E-81054IPR001005SANT/Myb domain
SuperFamilySSF466898.22E-141066IPR009057Homeodomain-like
CDDcd001671.53E-81154No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 89 aa     Download sequence    Send to blast
MASSSMSFHG SWTAEQNKAF EKALAVYDKD TPDRWSNVAR AVGGKTAEEV KRHYEILVQD  60
VMSIENGRVP FPNYRTTTGG RTKTNTADN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-36185183RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009785808.19e-62PREDICTED: protein RADIALIS-like 1
RefseqXP_016462488.19e-62PREDICTED: protein RADIALIS-like 1
SwissprotF4JVB88e-37RADL1_ARATH; Protein RADIALIS-like 1
TrEMBLA0A1S3ZDK12e-60A0A1S3ZDK1_TOBAC; protein RADIALIS-like 1
TrEMBLA0A1U7X4L82e-60A0A1U7X4L8_NICSY; protein RADIALIS-like 1
STRINGXP_009785808.14e-61(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20224231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.29e-38RAD-like 6
Publications ? help Back to Top
  1. Zhang M, et al.
    ROOT HAIR DEFECTIVE3 family of dynamin-like GTPases mediates homotypic endoplasmic reticulum fusion and is essential for Arabidopsis development.
    Plant Physiol., 2013. 163(2): p. 713-20
    [PMID:23922269]