PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016460996.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 273aa    MW: 30694.5 Da    PI: 6.161
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016460996.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2651.6e-2069118255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     +y+GVr+++ +g+W+AeIrdp+    + +r++lg+f+tae Aa a+++a++k++g
  XP_016460996.1  69 HYRGVRQRP-WGKWAAEIRDPK----KaARVWLGTFDTAEAAAIAYDEAALKFKG 118
                     7********.**********94....45************************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.106.5E-3368127IPR001471AP2/ERF domain
PfamPF008479.0E-1469118IPR001471AP2/ERF domain
PROSITE profilePS5103224.90869126IPR001471AP2/ERF domain
SuperFamilySSF541712.29E-2269127IPR016177DNA-binding domain
SMARTSM003802.2E-3869132IPR001471AP2/ERF domain
CDDcd000187.13E-2269127No hitNo description
PRINTSPR003671.8E-117081IPR001471AP2/ERF domain
PRINTSPR003671.8E-1192108IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MSAMVSVLSQ VIGSTTTTTT NNNNNTNISS VSSSVNGINP LTLPQSTGAN LQNQSQSVQE  60
QGNQQRKRHY RGVRQRPWGK WAAEIRDPKK AARVWLGTFD TAEAAAIAYD EAALKFKGNK  120
AKLNFPERVQ GKTEFSFLTN TTQDLGIVGQ QFPATSSINS NLPYFQPNYL SQEHFPNVHH  180
YAQLLRDGNN FEMNFGVSPN FYQPISEGFV SESLPNTSLE LQQGTFHEQE QEVSYNQQQE  240
EDFLRFPFHY GNSNSSTGPN TGESNWEDFE HRK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-2768129163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016460996.10.0PREDICTED: ethylene-responsive transcription factor ERF113-like
TrEMBLA0A1S3Z9A40.0A0A1S3Z9A4_TOBAC; ethylene-responsive transcription factor ERF113-like
STRINGXP_009804195.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13330.19e-34related to AP2 6l