PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016458704.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family S1Fa-like
Protein Properties Length: 85aa    MW: 9401.18 Da    PI: 10.3894
Description S1Fa-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016458704.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1S1FA131.91.7e-411885370
            S1FA  3 vakveakGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGvavPGe 70
                     ++ve++G+nPGlivl+vvgglll flvgny+ly+yaqk+lPP+kkkPvskkklkre+lkqGv++PGe
  XP_016458704.1 18 AKNVEVQGFNPGLIVLIVVGGLLLAFLVGNYLLYMYAQKTLPPKKKKPVSKKKLKRERLKQGVSAPGE 85
                    5689***************************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046891.2E-392185IPR006779DNA binding protein S1FA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 85 aa     Download sequence    Send to blast
MDYEGDPPPS FDPMKNTAKN VEVQGFNPGL IVLIVVGGLL LAFLVGNYLL YMYAQKTLPP  60
KKKKPVSKKK LKRERLKQGV SAPGE
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically recognizes a negative element (S1F) within the RPS1 promoter. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754485e-54HG975448.1 Solanum pennellii chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009767587.12e-54PREDICTED: DNA-binding protein S1FA-like
RefseqXP_016458704.12e-54PREDICTED: DNA-binding protein S1FA-like
SwissprotQ7XLX62e-15S1FA2_ORYSJ; DNA-binding protein S1FA2
TrEMBLA0A1S3Z2P84e-53A0A1S3Z2P8_TOBAC; DNA-binding protein S1FA-like
TrEMBLA0A1U7VHN24e-53A0A1U7VHN2_NICSY; DNA-binding protein S1FA-like
STRINGXP_009767587.17e-54(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31742249
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]