PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016458288.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family SBP
Protein Properties Length: 225aa    MW: 24075 Da    PI: 7.2634
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016458288.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP673.8e-21176223148
                     --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSS CS
             SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsr 48 
                     +C vegC+ dls+akeyhr+h+vC+ hsk+p+v++ g e+rfCqqCs 
  XP_016458288.1 176 CCLVEGCNLDLSSAKEYHRKHRVCHSHSKCPKVIIGGAERRFCQQCSS 223
                     6*********************************************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.105.8E-21170222IPR004333Transcription factor, SBP-box
PROSITE profilePS5114119.025174225IPR004333Transcription factor, SBP-box
SuperFamilySSF1036124.32E-20175223IPR004333Transcription factor, SBP-box
PfamPF031104.0E-16177223IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MEWNVKWDWG DLMMFGSEAC GSLKELQLTD WGVDQEGELD RRSFNLSGFG GSVGGYGSDM  60
GRSSSIKSSI SASTDSSPNE TLKASSFTFE ASNGSQGNLG KDVEQCRDEP YGCSPPMEAL  120
IGYDGPLTGL KLGKRTVESN SGGINVKLPS SSTIPVSSVS AAKKKKSSSQ NALIPCCLVE  180
GCNLDLSSAK EYHRKHRVCH SHSKCPKVII GGAERRFCQQ CSSLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj0_A1e-13176222551squamosa promoter-binding protein-like 12
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016458284.11e-165PREDICTED: squamosa promoter-binding-like protein 2 isoform X1
RefseqXP_016458285.11e-165PREDICTED: squamosa promoter-binding-like protein 2 isoform X1
RefseqXP_016458286.11e-165PREDICTED: squamosa promoter-binding-like protein 2 isoform X1
RefseqXP_016458287.11e-165PREDICTED: squamosa promoter-binding-like protein 2 isoform X1
RefseqXP_016458288.11e-165PREDICTED: squamosa promoter-binding-like protein 2 isoform X1
RefseqXP_016458289.11e-165PREDICTED: squamosa promoter-binding-like protein 2 isoform X1
RefseqXP_016458291.11e-165PREDICTED: squamosa promoter-binding-like protein 2 isoform X1
RefseqXP_016458292.11e-165PREDICTED: squamosa promoter-binding-like protein 2 isoform X1
RefseqXP_016458293.11e-165PREDICTED: squamosa promoter-binding-like protein 2 isoform X1
RefseqXP_016458294.11e-165PREDICTED: squamosa promoter-binding-like protein 2 isoform X1
RefseqXP_016458295.11e-165PREDICTED: squamosa promoter-binding-like protein 2 isoform X1
TrEMBLA0A1S3Z1I81e-163A0A1S3Z1I8_TOBAC; squamosa promoter-binding-like protein 2 isoform X1
STRINGXP_009796500.11e-161(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43270.31e-26squamosa promoter binding protein-like 2