PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016455805.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family LBD
Protein Properties Length: 111aa    MW: 12280.8 Da    PI: 6.3358
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016455805.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26059.69.1e-1915546100
          DUF260  46 lkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100
                     +++lpe++r da+ss+vyeA+ar+rdPvyG+vg i++lqqq++ l+++la++++e
  XP_016455805.1   1 MQELPEHKRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDMLRTQLAMAQAE 55 
                     6899**********************************************99976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031951.2E-16153IPR004883Lateral organ boundaries, LOB
PROSITE profilePS5089111.676156IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 111 aa     Download sequence    Send to blast
MQELPEHKRG DAVSSMVYEA NARVRDPVYG CVGAISSLQQ QIDMLRTQLA MAQAEVVHLR  60
LRQSAGITNS PINSGSPSSH IMGSHQPKGY FHMDLDVDQS NNSFNEPIWP C
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-1817056125LOB family transfactor Ramosa2.1
5ly0_B3e-1817056125LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016455805.13e-79PREDICTED: LOB domain-containing protein 4-like
SwissprotQ9SHE91e-28LBD4_ARATH; LOB domain-containing protein 4
TrEMBLA0A1S3YUV26e-78A0A1S3YUV2_TOBAC; LOB domain-containing protein 4-like
STRINGXP_009609750.12e-77(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31320.15e-31LOB domain-containing protein 4