PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016453970.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bZIP
Protein Properties Length: 506aa    MW: 57083.1 Da    PI: 6.9577
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016453970.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_133.21.1e-10215250540
                     CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLea 40 
                     k  rr+++NReAAr+sR+RKka++++Le     L++
  XP_016453970.1 215 KTLRRLAQNREAARKSRLRKKAYVQQLESSRIRLTQ 250
                     7789***********************985555544 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1709.6E-9207257No hitNo description
SMARTSM003383.7E-8211290IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.266213257IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.94E-7215257No hitNo description
CDDcd147082.73E-22215267No hitNo description
PfamPF001707.2E-8215253IPR004827Basic-leucine zipper domain
PROSITE patternPS000360218233IPR004827Basic-leucine zipper domain
PfamPF141449.5E-32306380IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 506 aa     Download sequence    Send to blast
MGFERAFVES SPEQENKLFV GVSYMDSSNK NQDPLESNNQ ISFGGQHQHH QQQFFYNHHQ  60
QQQLQNNNQI SFGMMQQSSS AIPGSLISKD SAGAYDLGEL DQALFQYLDG QDPSSIQEQR  120
QNSGMRPPTL NIFPSQPMHV EPSTTNTMNT GLVSPAMSGS KRSSQPSMEL SNNLKNNDAP  180
SASGPEPPKA AKREGNRKGP TSSSEQDGPK TPDPKTLRRL AQNREAARKS RLRKKAYVQQ  240
LESSRIRLTQ LEQELQRARA QGYYFGGNSL LGGEKNLPVN MGNMSSDAAV FDMEYARWLE  300
EHHRLMCELR NAVQEHFLEN ELRIYVDNCV THYDEIMNLK SMLAKSDVFH LVSGMWKTPA  360
ERCFMWMGGF RPSELLKIIL SQIEPLTEQQ LMGICGLQQS TQEAEDALSQ GLEALNHSLS  420
DTIASDALSC PQNMANYMGQ MALAMNKLST LEGFVRQADN LRHQTIHRLH QLLTTRQAAR  480
CFLAIAEYFH RLRALSSLWL ARPRQE
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00491DAPTransfer from AT5G06839Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Interaction ? help Back to Top
Source Intact With
IntActSearch Q52MZ2
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY9980180.0AY998018.1 Nicotiana tabacum TGA10 transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016453970.10.0PREDICTED: transcription factor HBP-1b(c38)-like isoform X1
SwissprotO241601e-129TGA21_TOBAC; TGACG-sequence-specific DNA-binding protein TGA-2.1
TrEMBLQ52MZ20.0Q52MZ2_TOBAC; TGA10 transcription factor
STRINGVIT_08s0007g06160.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22792145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06839.30.0bZIP family protein
Publications ? help Back to Top
  1. Schiermeyer A,Thurow C,Gatz C
    Tobacco bZIP factor TGA10 is a novel member of the TGA family of transcription factors.
    Plant Mol. Biol., 2003. 51(6): p. 817-29
    [PMID:12777042]
  2. Ndamukong I, et al.
    SA-inducible Arabidopsis glutaredoxin interacts with TGA factors and suppresses JA-responsive PDF1.2 transcription.
    Plant J., 2007. 50(1): p. 128-39
    [PMID:17397508]