PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016453703.1
Common NameNtabSPL6-6
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family SBP
Protein Properties Length: 523aa    MW: 58200.2 Da    PI: 8.1876
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016453703.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP1331e-41216291277
                     -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
             SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                     Cqv+gC++dls+ k+yh+rhkvC+ hsk++vv+v+g+eqrfCqqCsrfh l efDe+krsCr+rLa+hnerrrk+q
  XP_016453703.1 216 CQVHGCNKDLSSSKDYHKRHKVCDEHSKTAVVIVNGIEQRFCQQCSRFHLLAEFDEGKRSCRKRLAGHNERRRKPQ 291
                     **************************************************************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.107.9E-34210277IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.607213290IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.57E-39214295IPR004333Transcription factor, SBP-box
PfamPF031103.0E-32216289IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 523 aa     Download sequence    Send to blast
MEPLSYALEG RGFLFPDNVE LPVDTLSRSR NIVKEWNLNP FCDVDKSICG PSQEITESTG  60
LLESGIADIF KKSAASNSCP GALSGEIGNG SMLELGAMFN HSATKSNNLM SLPIGLKLDE  120
LTDYGEVRTS QSSKESSVLS SPESSLPTGK ATQRKSLHSQ FPISQVRGQK GEESTVYREV  180
KSNQSLKRNL DLSSVNSSLQ GKRLRTTNLH SEVPFCQVHG CNKDLSSSKD YHKRHKVCDE  240
HSKTAVVIVN GIEQRFCQQC SRFHLLAEFD EGKRSCRKRL AGHNERRRKP QFDTHWGSRF  300
LDMTQRRVPF LFPEILPGSF FYQENYEVNN NNQNLKLERK PFCISQLAMS VTRGQSPAES  360
IQHQYGVRKQ DLSKVPVGST LLSVQEFSAG QNSSCALSLL SAHSQNLLHN STDISPTPPW  420
MVKGNDHAYI KDDHHNLAKS PRVSVAKSST PIEQDGVVHV PEIQRDGHDQ RANSMNSKNC  480
LSPEGGPTMN LVQLSSHLLR VEQEKNSVQV KQENDIFSSF AST
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A7e-29211289684squamosa promoter binding protein-like 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLC0732940.0LC073294.1 Nicotiana tabacum NtabSPL6-6 mRNA for squamosa promoter binding protein NtabSPL6-6, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001312181.10.0squamosa promoter-binding-like protein 6
RefseqXP_009627050.10.0PREDICTED: squamosa promoter-binding-like protein 6 isoform X1
RefseqXP_016453703.10.0PREDICTED: squamosa promoter-binding-like protein 6
RefseqXP_018633598.10.0PREDICTED: squamosa promoter-binding-like protein 6 isoform X1
RefseqXP_018633599.10.0PREDICTED: squamosa promoter-binding-like protein 6 isoform X1
TrEMBLA0A125SZN30.0A0A125SZN3_TOBAC; Squamosa promoter binding protein NtabSPL6-6
STRINGXP_009627050.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA68311933
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69170.11e-52SBP family protein
Publications ? help Back to Top
  1. Han YY,Ma YQ,Li DZ,Yao JW,Xu ZQ
    Characterization and phylogenetic analysis of fifteen NtabSPL genes in Nicotiana tabacum L. cv. Qinyan95.
    Dev. Genes Evol., 2016. 226(1): p. 1-14
    [PMID:26635304]