PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016450439.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GRAS
Protein Properties Length: 438aa    MW: 49671.1 Da    PI: 5.9913
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016450439.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS2392e-73684352374
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl....fse..vsPi 90 
                      elL + A+ v+++++ +a+++L+   + as +g+p+qR++ yf+ AL++r+ r+  ++  + ++  ++ +n +eel ++ l    f +  ++P+
  XP_016450439.1  68 AELLQASAQLVATRKFDRATKFLSLCDQSASAAGTPVQRVVYYFADALQHRIDREIGKMPITREADIEAYSNDVEELVMD-LepavFAKrpLFPY 161
                     5789999***********************************************55544433333333333333333332.23466654449*** PP

            GRAS  91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfA.eelgvpfefnvlva 183
                      +++ +t  qaIl+++++++rvH iD+ i+ G +W +++q+La+R+e p  +l+i  vg+    sk+++e +g+rL+ fA e+l+++f+f++ v+
  XP_016450439.1 162 RQVTSFTGIQAILDSTKTAKRVHLIDLCIKSGSHWTTFMQTLADRDECPLkHLKISSVGR----SKKKMEDVGRRLSAFAaETLNISFSFKT-VV 251
                     **********************************************65544*********....9**************73679********.79 PP

            GRAS 184 krledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpre 278
                     ++l +l+ e+++v+ +E++aV + + l ++l+ + +++s    +++++ksl+P ++v+ve  a++  ++F + f e+l+y+sal d+ e+     
  XP_016450439.1 252 SDLRNLKSESFEVEADEVVAVYSDVILWTMLAWPNDMDS----LMEVIKSLNPCIIVLVEGIANTYLPDFIDSFNETLYYFSALTDCSEVL---- 338
                     99****************************966666666....**********************************************99.... PP

            GRAS 279 seerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdg.yrveeesgslvlgWkdrpLvsvSa 372
                     ++    +E +++++ i+n+++  g+e + rh +l+ Wr+ + ++G+ +  ls+    +a+ll  k +++g  + e ++++lv+ Wk+ p++ vSa
  XP_016450439.1 339 HKGVPIYEGFYIQKVIRNMITYHGEENVPRHGNLKVWRDLFAKFGMVETDLSHLSLIEASLLFDKSEFRGlCTCELDEKCLVIRWKKTPMICVSA 433
                     89999**************************************************************999789999******************* PP

            GRAS 373 Wr 374
                     W+
  XP_016450439.1 434 WK 435
                     *8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098535.87241414IPR005202Transcription factor GRAS
PfamPF035147.0E-7168435IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
MEAKKRGDHA EEKQESVVLS SAPTIMKIAR QRLLNHIAQK SDAYSIIFNP PTANSGLSPE  60
LEQDLDLAEL LQASAQLVAT RKFDRATKFL SLCDQSASAA GTPVQRVVYY FADALQHRID  120
REIGKMPITR EADIEAYSND VEELVMDLEP AVFAKRPLFP YRQVTSFTGI QAILDSTKTA  180
KRVHLIDLCI KSGSHWTTFM QTLADRDECP LKHLKISSVG RSKKKMEDVG RRLSAFAAET  240
LNISFSFKTV VSDLRNLKSE SFEVEADEVV AVYSDVILWT MLAWPNDMDS LMEVIKSLNP  300
CIIVLVEGIA NTYLPDFIDS FNETLYYFSA LTDCSEVLHK GVPIYEGFYI QKVIRNMITY  360
HGEENVPRHG NLKVWRDLFA KFGMVETDLS HLSLIEASLL FDKSEFRGLC TCELDEKCLV  420
IRWKKTPMIC VSAWKFQH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-299643532375GRAS family transcription factor containing p
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009798274.10.0PREDICTED: DELLA protein RGL1-like
RefseqXP_016450439.10.0PREDICTED: DELLA protein RGL1-like
TrEMBLM0ZMM40.0M0ZMM4_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000039540.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA85001728
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.14e-43RGA-like 1