PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016449439.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GRF
Protein Properties Length: 385aa    MW: 43699.6 Da    PI: 8.6593
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016449439.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC78.75.5e-2578121144
             WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                     d+epgrCrRtDGKkWRCs+++++++k+CErH+hrgr+rsrk++e
  XP_016449439.1  78 DPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSRKPVE 121
                     79***************************************986 PP

2QLQ59.59.7e-211145236
             QLQ  2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36
                    +FTa+Q+q+L++Q+l+yKy+++++PvPp+Ll  i+
  XP_016449439.1 11 PFTANQWQELEHQALIYKYMVSGMPVPPDLLYTIR 45
                    8*****************************97776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009515.2E-121046IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166623.2081146IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088804.9E-161144IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166724.94178122IPR014977WRC domain
PfamPF088793.7E-2179121IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MMSTAARSRF PFTANQWQEL EHQALIYKYM VSGMPVPPDL LYTIRRSMDS SLSSKLVLHQ  60
PHHIGWNCFQ MGFGKKIDPE PGRCRRTDGK KWRCSKEAYP DSKYCERHMH RGRNRSRKPV  120
EIMTTTSTNT STTTRPISTA TNTTAPTAIS ISSINKNTNN ISSSSPTSSL HSFSYLSSTH  180
EPHQYPFLYP HSSSSRPSPA AIGLESSAYS RNGYGDGMKE DVDEHIFFSE TSGTVRSTCG  240
SNSVDDTWQL SPLTMASPMK QRTYSLSQNT GHSASSYLQL QSLNESSKDH HHQYYNDAKS  300
IKLETEDQQH QPKKVMHHFF DEWPKDNKDS WLDSEDKFSG LSKTQLSISI PNPSHDFFIT  360
TNGKLSRFLF HLITFTWSEG ALEQL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755199e-81HG975519.1 Solanum lycopersicum chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016449439.10.0PREDICTED: growth-regulating factor 1-like isoform X1
TrEMBLA0A1S3YBF20.0A0A1S3YBF2_TOBAC; growth-regulating factor 1-like isoform X1
STRINGXP_009767378.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7432384
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.13e-60growth-regulating factor 5