PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016445883.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family LBD
Protein Properties Length: 153aa    MW: 17336.8 Da    PI: 4.7206
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016445883.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26033.99.1e-111376197
          DUF260 61 lvyeAearardPvyGavgvilklqqqleqlkaelall 97
                    +vyeA ar+rdPvyG+vg+i++lq+++ +l++el+++
  XP_016445883.1  1 MVYEATARLRDPVYGCVGIISALQKHVFHLQSELNEA 37
                    69*******************************9986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508919.306141IPR004883Lateral organ boundaries, LOB
PfamPF031953.4E-9136IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 153 aa     Download sequence    Send to blast
MVYEATARLR DPVYGCVGII SALQKHVFHL QSELNEALAE VMSLRTQVSD ALSLPSLLEG  60
SPFTPENHEF LHFQKPSEQN AYANASDALL LLPEAADHYC LQETEVLHPL PYLDILFSSM  120
DNNRLSIFAF HSTPWDLVKA MFQSCRYTSF FLL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754457e-64HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016445883.11e-110PREDICTED: LOB domain-containing protein 3-like
TrEMBLA0A1S3Y0Z41e-109A0A1S3Y0Z4_TOBAC; LOB domain-containing protein 3-like
STRINGXP_009631247.11e-109(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA131471419
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30340.17e-13LOB domain-containing protein 13