PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016443153.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family LBD
Protein Properties Length: 178aa    MW: 19999.7 Da    PI: 6.7366
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016443153.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260131.82.9e-41111101100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                     +CaaCk+l+r+C+++C +apyf +++pkkfanvhk+FGasnv+k+l+++pe++r+d+++slvy+Ae+r+rdPvyG++g i +lq+++ +l+++l 
  XP_016443153.1  11 SCAACKLLKRRCTPNCQFAPYFRSDEPKKFANVHKVFGASNVSKILNDVPEDQRDDTVNSLVYKAEVRLRDPVYGCIGAIASLQRKMVELQHDLM 105
                     6*********************************************************************************************9 PP

          DUF260  96 llkee 100
                     l++++
  XP_016443153.1 106 LAQTR 110
                     98875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.15210111IPR004883Lateral organ boundaries, LOB
PfamPF031953.7E-4011108IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MKSNEPRSSS SCAACKLLKR RCTPNCQFAP YFRSDEPKKF ANVHKVFGAS NVSKILNDVP  60
EDQRDDTVNS LVYKAEVRLR DPVYGCIGAI ASLQRKMVEL QHDLMLAQTR LAYFAAKQNP  120
TTNCSLMLDY DPFNVANMMP SDFVDVPVTA GYLDSYAQNS FDMDHCASTN EFGQFPFP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-4561186118LOB family transfactor Ramosa2.1
5ly0_B3e-4561186118LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016443153.11e-131PREDICTED: LOB domain-containing protein 21-like
SwissprotQ9SRL85e-60LBD21_ARATH; LOB domain-containing protein 21
TrEMBLA0A1S3XT801e-130A0A1S3XT80_TOBAC; LOB domain-containing protein 21-like
STRINGXP_009630248.11e-130(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11090.12e-62LOB domain-containing protein 21
Publications ? help Back to Top
  1. Weber AP,Weber KL,Carr K,Wilkerson C,Ohlrogge JB
    Sampling the Arabidopsis transcriptome with massively parallel pyrosequencing.
    Plant Physiol., 2007. 144(1): p. 32-42
    [PMID:17351049]