PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016441663.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family LBD
Protein Properties Length: 161aa    MW: 17696.3 Da    PI: 7.0699
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016441663.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601223.1e-3851051100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                     +C aCk+lrrkC+k+C++apyf  eq +++fa+vhk+FGasn +kll ++p ++r +++ +l+yeA ar+rdPvyG+v++i++lqqq+ +l+ael
  XP_016441663.1   5 PCGACKYLRRKCVKGCIFAPYFDTEQgMSHFAAVHKVFGASNASKLLLSIPANKRLETVITLCYEALARVRDPVYGCVAHIFTLQQQVLTLQAEL 99 
                     7**********************99988******************************************************************* PP

          DUF260  95 allkee 100
                     a+++++
  XP_016441663.1 100 AYVQAR 105
                     **9976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.7724106IPR004883Lateral organ boundaries, LOB
PfamPF031957.7E-375103IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    Send to blast
MSSGPCGACK YLRRKCVKGC IFAPYFDTEQ GMSHFAAVHK VFGASNASKL LLSIPANKRL  60
ETVITLCYEA LARVRDPVYG CVAHIFTLQQ QVLTLQAELA YVQARLSTLQ SASSEVAATY  120
SNISSVSMDP LFDTTGFHHV LDEELENCDI HSVAVDFVSR R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-3521278130LOB family transfactor Ramosa2.1
5ly0_B2e-3521278130LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009789949.11e-117PREDICTED: LOB domain-containing protein 19
RefseqXP_016441663.11e-117PREDICTED: LOB domain-containing protein 19-like
SwissprotO221321e-58LBD19_ARATH; LOB domain-containing protein 19
SwissprotO813222e-58LBD31_ARATH; LOB domain-containing protein 31
TrEMBLA0A1S3XP111e-116A0A1S3XP11_TOBAC; LOB domain-containing protein 19-like
TrEMBLA0A1U7XST21e-116A0A1U7XST2_NICSY; LOB domain-containing protein 19
STRINGXP_009789949.11e-117(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45410.16e-61LOB domain-containing protein 19