PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016441373.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 149aa    MW: 16389.1 Da    PI: 9.4991
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016441373.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.20.000134567123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    ++C++C + F ++  L  H++ H
  XP_016441373.1 45 FSCNYCRRKFYSSQALGGHQNAH 67
                    89******************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.15E-64372No hitNo description
PROSITE profilePS5015711.0534572IPR007087Zinc finger, C2H2
PROSITE patternPS0002804767IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 149 aa     Download sequence    Send to blast
MSYEPNTALN LSLSKNELSF DLLFDQSSSS SSSSPLSPAD QPRVFSCNYC RRKFYSSQAL  60
GGHQNAHKLE RTLAKKSREL SSSLRPHSGW STNPNSGSGP TSPSHGHAAR FVATELSYGR  120
REIMSYGSRK NGESVVQEDF GQLDLSLRL
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of floral organ abscission. Participates in processes that directly or indirectly influence shedding of floral organs. {ECO:0000269|PubMed:18192438}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009798282.11e-105PREDICTED: zinc finger protein 2
RefseqXP_016441373.11e-105PREDICTED: zinc finger protein 2-like
SwissprotQ392619e-25ZFP2_ARATH; Zinc finger protein 2
TrEMBLA0A1S3XN731e-104A0A1S3XN73_TOBAC; zinc finger protein 2-like
TrEMBLA0A1U7Y2B71e-104A0A1U7Y2B7_NICSY; zinc finger protein 2
STRINGXP_009798282.11e-104(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA88762128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57520.13e-25zinc finger protein 2