PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016440903.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family LBD
Protein Properties Length: 247aa    MW: 26967.9 Da    PI: 6.2179
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016440903.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601231.5e-38391401101
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                     +C aCk+lrrkC ++C++ap++ ++q +++fa+vhk+FGasnv+kll ++p ++r+da+ +++yeA+ar++dPvyG+v++il+lqqq+++l+ael
  XP_016440903.1  39 PCGACKFLRRKCISGCIFAPHYGSDQgAARFAAVHKVFGASNVSKLLLHIPANRRHDAVVTITYEAQARLSDPVYGCVSTILALQQQVASLQAEL 133
                     7***********************9989******************************************************************* PP

          DUF260  95 allkeel 101
                     a+++++l
  XP_016440903.1 134 AVVQTQL 140
                     **99885 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.55538140IPR004883Lateral organ boundaries, LOB
PfamPF031959.1E-3839137IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MDEPPSDGTS ENRRKGPGKR ATGAVEPLAS AILPASTAPC GACKFLRRKC ISGCIFAPHY  60
GSDQGAARFA AVHKVFGASN VSKLLLHIPA NRRHDAVVTI TYEAQARLSD PVYGCVSTIL  120
ALQQQVASLQ AELAVVQTQL INNRYAMENA LQTSQQQHHL QQQLHQEHHI AILQPTYSDN  180
SSVSNNNLIN NINSANTFNS TAFDQLPDDT CATTVPNNNS PSFDPVHQED EEEEESHPIA  240
FTNQMFH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-38291461115LOB family transfactor Ramosa2.1
5ly0_B1e-38291461115LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009779769.10.0PREDICTED: LOB domain-containing protein 20
RefseqXP_016440903.10.0PREDICTED: LOB domain-containing protein 20-like
SwissprotQ9SRV31e-72LBD20_ARATH; LOB domain-containing protein 20
TrEMBLA0A1S3XLV90.0A0A1S3XLV9_TOBAC; LOB domain-containing protein 20-like
TrEMBLA0A1U7WYL90.0A0A1U7WYL9_NICSY; LOB domain-containing protein 20
STRINGXP_009779769.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03760.16e-60LOB domain-containing protein 20