PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016440614.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family LBD
Protein Properties Length: 199aa    MW: 21670.5 Da    PI: 5.7956
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016440614.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260964e-302104198
          DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                     +C++C+vlrr+C+++C+l+ ++     p +q +++ +v k+FG+s ++ +++a+pe++r+++++sl++eA+ r+ +Pv Gavg++++++++++q+
  XP_016440614.1   2 SCNGCRVLRRRCSDNCTLRACLdgiddPRAQGNATLFVSKFFGRSDLMAFISAVPENRRPALFKSLLFEACGRTVNPVTGAVGLLSTGNWHVCQK 96 
                     6*************************99******************************************************************* PP

          DUF260  91 kaelallk 98 
                     ++e++l++
  XP_016440614.1  97 AVETVLVG 104
                     **998876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089118.231107IPR004883Lateral organ boundaries, LOB
PfamPF031953.4E-262101IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MSCNGCRVLR RRCSDNCTLR ACLDGIDDPR AQGNATLFVS KFFGRSDLMA FISAVPENRR  60
PALFKSLLFE ACGRTVNPVT GAVGLLSTGN WHVCQKAVET VLVGGNLRPV FAGTLTPTAY  120
MDETFESFRC GGAWDIPNQF SNKSGSFIDG SDHTDTTDWV GLEKRWNTMS SIGSETELSD  180
VSLGLDSGNK EPKLLNLFV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009783238.11e-146PREDICTED: LOB domain-containing protein 38-like isoform X1
RefseqXP_016440614.11e-146PREDICTED: LOB domain-containing protein 38-like isoform X1
SwissprotQ9SN231e-54LBD38_ARATH; LOB domain-containing protein 38
TrEMBLA0A1S3XLA51e-144A0A1S3XLA5_TOBAC; LOB domain-containing protein 38-like isoform X1
TrEMBLA0A1U7WXA81e-144A0A1U7WXA8_NICSY; LOB domain-containing protein 38-like isoform X1
STRINGXP_009783238.11e-145(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9662490
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49940.15e-57LOB domain-containing protein 38