PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016440396.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 127aa    MW: 14567.1 Da    PI: 6.7896
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016440396.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.51.9e-192374256
             AP2  2 gykGVrwdkkrgrWvAeIrdpseng..krkrfslgkfgtaeeAakaaiaarkklege 56
                    +y+GVr+++ +g+++AeIrd       + +r++lg++ tae+Aa+a+++a+ +++g+
  XP_016440396.1 23 KYRGVRRRP-WGKFAAEIRD----SarQGARVWLGTYNTAEDAARAYDRAAYSMRGH 74
                    8********.**********....33334**************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.47E-232382IPR016177DNA-binding domain
PROSITE profilePS5103223.5512381IPR001471AP2/ERF domain
CDDcd000181.98E-172382No hitNo description
SMARTSM003806.3E-332387IPR001471AP2/ERF domain
PfamPF008476.5E-152374IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.1E-312383IPR001471AP2/ERF domain
PRINTSPR003673.3E-112435IPR001471AP2/ERF domain
PRINTSPR003673.3E-114763IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 127 aa     Download sequence    Send to blast
MDEEPSHGRK METKNGGSGR EIKYRGVRRR PWGKFAAEIR DSARQGARVW LGTYNTAEDA  60
ARAYDRAAYS MRGHLAILNF PEEYNLPSSS SHFYTGSSSS REVLEFECLD DKLLEELLDC  120
DEQNKRK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-352311314114Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ2596071e-107HQ259607.1 Petunia x hybrida ethylene-responsive-element-binding factor 13 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016440396.16e-91PREDICTED: ethylene-responsive transcription factor 14-like
RefseqXP_018626630.16e-91PREDICTED: ethylene-responsive transcription factor 14-like
SwissprotQ9LTC53e-39ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A1S3XKE11e-89A0A1S3XKE1_TOBAC; ethylene-responsive transcription factor 14-like
STRINGXP_009601836.12e-90(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23220.18e-27ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]