PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016436693.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family LBD
Protein Properties Length: 174aa    MW: 19430.9 Da    PI: 6.7461
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016436693.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260132.31.9e-41111101100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                     +CaaCk+l+r+C+++C +apyf +++pkkfanvhk+FGasnv+k+l+++p+++red+++slvyeAe+r+rdPvyG++g i +lq+++ +l+++l 
  XP_016436693.1  11 SCAACKLLKRRCTSNCQFAPYFRSDEPKKFANVHKVFGASNVIKILNEVPQDQREDTVNSLVYEAEVRLRDPVYGCIGAIASLQRKMVELQHDLM 105
                     6********************************************************************************************99 PP

          DUF260  96 llkee 100
                     +++++
  XP_016436693.1 106 VTRAH 110
                     98876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.29310111IPR004883Lateral organ boundaries, LOB
PfamPF031959.1E-4111108IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
MKSNESRSSS SCAACKLLKR RCTSNCQFAP YFRSDEPKKF ANVHKVFGAS NVIKILNEVP  60
QDQREDTVNS LVYEAEVRLR DPVYGCIGAI ASLQRKMVEL QHDLMVTRAH LAYYEAKPST  120
SCSFLDYDPL NVNVPSVFVD TSLSGGFLDN FTQNSFGMDN STGSTNEFGQ FPFP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-4381148114LOB family transfactor Ramosa2.1
5ly0_B1e-4381148114LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754421e-121HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016436693.11e-128PREDICTED: LOB domain-containing protein 21-like
SwissprotQ9SRL82e-57LBD21_ARATH; LOB domain-containing protein 21
TrEMBLA0A1S3XAA21e-127A0A1S3XAA2_TOBAC; LOB domain-containing protein 21-like
STRINGXP_009799168.11e-127(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11090.12e-54LOB domain-containing protein 21
Publications ? help Back to Top
  1. Weber AP,Weber KL,Carr K,Wilkerson C,Ohlrogge JB
    Sampling the Arabidopsis transcriptome with massively parallel pyrosequencing.
    Plant Physiol., 2007. 144(1): p. 32-42
    [PMID:17351049]