PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016435041.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family LBD
Protein Properties Length: 185aa    MW: 20515.2 Da    PI: 5.5141
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016435041.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260143.18.7e-4581071100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                     +Ca+Ck+lrr+CakdC++apyfp+++p+kfa+vhk+FGasn++k+l++lp ++r da+sslvyeA+ar+rdPvyG+vg i+ lq+q++ql+ +la
  XP_016435041.1   8 PCASCKLLRRRCAKDCIFAPYFPSDDPHKFAIVHKVFGASNISKMLQELPVDKRADAVSSLVYEANARMRDPVYGCVGAISYLQNQVSQLQMQLA 102
                     7********************************************************************************************** PP

          DUF260  96 llkee 100
                     l+++e
  XP_016435041.1 103 LAQAE 107
                     *9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.8047108IPR004883Lateral organ boundaries, LOB
PfamPF031954.7E-448105IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MGAAGNSPCA SCKLLRRRCA KDCIFAPYFP SDDPHKFAIV HKVFGASNIS KMLQELPVDK  60
RADAVSSLVY EANARMRDPV YGCVGAISYL QNQVSQLQMQ LALAQAEILC IQMPSSQDHQ  120
PPNYLLPMSP PIHELVAADD EKSFLNLSHY LNNFESSSSH TCNSDISQEG VFLWTGQYDG  180
SLEQW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-4541097112LOB family transfactor Ramosa2.1
5ly0_B2e-4541097112LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009604707.11e-137PREDICTED: LOB domain-containing protein 12-like
RefseqXP_016435041.11e-137PREDICTED: LOB domain-containing protein 12-like
SwissprotQ8LBW36e-72LBD12_ARATH; LOB domain-containing protein 12
TrEMBLA0A1S3X5C41e-136A0A1S3X5C4_TOBAC; LOB domain-containing protein 12-like
STRINGXP_009604706.11e-135(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30130.16e-66LBD family protein
Publications ? help Back to Top
  1. Penfield S, et al.
    Reserve mobilization in the Arabidopsis endosperm fuels hypocotyl elongation in the dark, is independent of abscisic acid, and requires PHOSPHOENOLPYRUVATE CARBOXYKINASE1.
    Plant Cell, 2004. 16(10): p. 2705-18
    [PMID:15367715]