PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016433338.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family LBD
Protein Properties Length: 209aa    MW: 23196.4 Da    PI: 7.314
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016433338.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26098.94.8e-312103197
          DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                     +C++C+vlr++C+++C+l+p++     p++q +++ +v+k+FG++ ++++++a+pe++r+ +++sl+yeA  r+ +Pv+G+vg++++++++++q+
  XP_016433338.1   2 SCNGCRVLRKGCSENCILRPCLqwietPEAQGHATIFVAKFFGRADLMSFISAVPENQRPGLFQSLLYEAAGRTVNPVNGVVGLLWTGNWHVCQV 96 
                     6********************************************************************************************** PP

          DUF260  91 kaelall 97 
                     ++e++l+
  XP_016433338.1  97 AVETVLR 103
                     *999876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089120.0431107IPR004883Lateral organ boundaries, LOB
PfamPF031952.2E-262101IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSENCILR PCLQWIETPE AQGHATIFVA KFFGRADLMS FISAVPENQR  60
PGLFQSLLYE AAGRTVNPVN GVVGLLWTGN WHVCQVAVET VLRGGTLSPI PELFGKSSEL  120
DEESECTNVF KLLNHTRSKM QKRRRSSDEA AAKVLQLENL DLSLLTRGFQ SEIVYSPSRN  180
SEESVTTTCF ESSLGDHQGK QPRLLSLFT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009777174.11e-154PREDICTED: LOB domain-containing protein 38-like
RefseqXP_016433338.11e-154PREDICTED: LOB domain-containing protein 38-like
SwissprotQ9SN233e-75LBD38_ARATH; LOB domain-containing protein 38
TrEMBLA0A1S3X0X31e-153A0A1S3X0X3_TOBAC; LOB domain-containing protein 38-like
TrEMBLA0A1U7WR681e-153A0A1U7WR68_NICSY; LOB domain-containing protein 38-like
STRINGXP_009777174.11e-153(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9662490
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49940.11e-77LOB domain-containing protein 38