PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009803304.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family TCP
Protein Properties Length: 299aa    MW: 33565.3 Da    PI: 6.3755
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009803304.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP109.74.2e-3417129266
             TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt............................... 65 
                     +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+dk+sk+++WL++ ak ai +l+++                               
  XP_009803304.1  17 TGRKDRHSKVYTAKGPRDRRVRLSALTAIQFYDVQDRLGYDKPSKAVDWLIKRAKNAIGKLAELppwdqnddvelkniptsierevgssgniale 111
                     79**************************************************************7776666666654444444444443333333 PP

             TCP  66 .................s 66 
                                       
  XP_009803304.1 112 phllsifssrflvqrqlA 129
                     333333333332222221 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.3E-3117135IPR005333Transcription factor, TCP
PROSITE profilePS5136931.8251977IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MEGEIVQVEG GRIPRSTGRK DRHSKVYTAK GPRDRRVRLS ALTAIQFYDV QDRLGYDKPS  60
KAVDWLIKRA KNAIGKLAEL PPWDQNDDVE LKNIPTSIER EVGSSGNIAL EPHLLSIFSS  120
RFLVQRQLAE DPSSSSHVMQ APEPETSSVA DTSKSFFPMN SGTTLMNFLS FPHQEISRDS  180
IQNEDLGLSL HTNLHDQNSN HSSNLVNFEE NYNPRMANWI LPHQQFLSQR EPLQSNFSQL  240
ISHASELQQP MASAEHKSSI YNSHFNGDFQ FPARLIQGEE DINGVICIKP SSGSSSSQH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009803304.10.0PREDICTED: transcription factor TCP4-like
SwissprotQ8LPR52e-48TCP4_ARATH; Transcription factor TCP4
TrEMBLG3BGV03e-86G3BGV0_SOLLC; TCP transcription factor 10
STRINGPGSC0003DMT4000243284e-85(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA66072234
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15030.31e-49TCP family protein