PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009803301.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family LBD
Protein Properties Length: 227aa    MW: 24681.6 Da    PI: 7.4421
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009803301.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260124.65.1e-39371371100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                     +C aCk+lrrkC+++C++apyf ++q +++fa+vhk+FGasn +kll ++p ++r da+ +l+yeA ar+rdP+yG+v++i++lqqq+ +l+ael
  XP_009803301.1  37 PCGACKFLRRKCVRGCIFAPYFDSDQgTAHFAAVHKVFGASNASKLLLRIPAHKRLDAVVTLCYEALARVRDPIYGCVAHIFTLQQQVVSLQAEL 131
                     7***********************9989******************************************************************* PP

          DUF260  95 allkee 100
                     a+++++
  XP_009803301.1 132 AYVQAR 137
                     **9976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.74436138IPR004883Lateral organ boundaries, LOB
PfamPF031951.5E-3737135IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MNGGSCGGAD GQYNNNNNNN NNNNNNNNVV GAGGSGPCGA CKFLRRKCVR GCIFAPYFDS  60
DQGTAHFAAV HKVFGASNAS KLLLRIPAHK RLDAVVTLCY EALARVRDPI YGCVAHIFTL  120
QQQVVSLQAE LAYVQARLST LQHLPMRQGP EPQSPITPTA LQSSSDIFCT TSSISSSSNN  180
MEYPQFDITA GLSDSFDDQE LENFELHTLA REFVSRHLPG VRFRPSP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009803301.11e-169PREDICTED: LOB domain-containing protein 19-like
SwissprotO813228e-66LBD31_ARATH; LOB domain-containing protein 31
TrEMBLA0A061DTV82e-92A0A061DTV8_THECC; LOB domain-containing protein 31
STRINGVIT_15s0048g00840.t013e-78(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00210.11e-64LOB domain-containing protein 31