PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009795320.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family LBD
Protein Properties Length: 273aa    MW: 27953.6 Da    PI: 7.5013
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009795320.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601292.1e-40451451100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                     +C aCk+lrrkC+++C++apyf +eq +++fa+vhk+FGasnv+kll ++p ++r da+ +++yeA+ar+rdPvyG+v++i++lqqq+ +l+ael
  XP_009795320.1  45 PCGACKFLRRKCVAGCIFAPYFDSEQgAAHFAAVHKVFGASNVSKLLLHIPVHKRLDAVVTICYEAQARLRDPVYGCVAHIFALQQQVVNLQAEL 139
                     7***********************9989******************************************************************* PP

          DUF260  95 allkee 100
                     ++l+++
  XP_009795320.1 140 SYLQAH 145
                     *99986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.91444146IPR004883Lateral organ boundaries, LOB
PfamPF031952.6E-3945143IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010089Biological Processxylem development
GO:0010311Biological Processlateral root formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MSSNNPSSCT GGGITATGGG GVGGGTSGSS STGGGGAGGG GGGGPCGACK FLRRKCVAGC  60
IFAPYFDSEQ GAAHFAAVHK VFGASNVSKL LLHIPVHKRL DAVVTICYEA QARLRDPVYG  120
CVAHIFALQQ QVVNLQAELS YLQAHLATLE LPTPPPQPPS QQPQTLLPPQ PAAALSITDL  180
PTAGPSILPA AYDLSSLFDP MVQPSWAMQQ PRPTPMDPRH YGSGARAPVE MSPSTTGGGS  240
GDLQELAREL LHRHGSPTVV QCTESSALPP QTK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00314DAPTransfer from AT2G45420Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755137e-90HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009795320.10.0PREDICTED: LOB domain-containing protein 30
RefseqXP_016488575.10.0PREDICTED: LOB domain-containing protein 30-like
SwissprotO221317e-85LBD18_ARATH; LOB domain-containing protein 18
TrEMBLK4AZ821e-107K4AZ82_SOLLC; Uncharacterized protein
STRINGSolyc01g091420.1.11e-106(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45420.15e-79LOB domain-containing protein 18