PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009784491.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family LBD
Protein Properties Length: 155aa    MW: 17184.7 Da    PI: 6.4784
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009784491.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260142.31.5e-4471061100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                     +Ca+Ck+lrr+CakdC++apyfp ++p+kfa+vhk+FGasn++k++++lp ++r da++slvyeA+ar+rdPvyG+vg i+ lq+q++ql+ +la
  XP_009784491.1   7 PCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNISKMIQELPVQQRADAVNSLVYEANARMRDPVYGCVGAISYLQNQVSQLEMQLA 101
                     7********************************************************************************************** PP

          DUF260  96 llkee 100
                     ++++e
  XP_009784491.1 102 MAQTE 106
                     99987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089127.0316107IPR004883Lateral organ boundaries, LOB
PfamPF031955.3E-447104IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 155 aa     Download sequence    Send to blast
MGGGTSPCAS CKLLRRRCAK DCIFAPYFPP DDPHKFAIVH KVFGASNISK MIQELPVQQR  60
ADAVNSLVYE ANARMRDPVY GCVGAISYLQ NQVSQLEMQL AMAQTEILCI QMQQESAPNL  120
PAIQMEQYDG STPQALSFGS PNYLVAEQEF RRCGF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755181e-46HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.
GenBankHG9754451e-46HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009784491.11e-113PREDICTED: LOB domain-containing protein 12
RefseqXP_016487961.11e-113PREDICTED: LOB domain-containing protein 12-like
SwissprotQ8LBW33e-75LBD12_ARATH; LOB domain-containing protein 12
TrEMBLK4CA902e-78K4CA90_SOLLC; Uncharacterized protein
TrEMBLM1CZR12e-78M1CZR1_SOLTU; Uncharacterized protein
STRINGSolyc06g082310.2.17e-78(Solanum lycopersicum)
STRINGPGSC0003DMT4000782567e-78(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30130.11e-76LBD family protein