PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009783399.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family AP2
Protein Properties Length: 553aa    MW: 62818.2 Da    PI: 9.7328
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009783399.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.73.4e-19114163154
             AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkle 54 
                     ++y+GVr++k +g+W+AeIrd      +++r +lg+f+taeeAa a+++a+ +++
  XP_009783399.1 114 KKYRGVRQRK-WGKWAAEIRDaR----RKTRLWLGTFDTAEEAALAYDKAAIEIR 163
                     59*******9.**********55....35**********************9987 PP

2AP259.67.3e-19472522256
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                     +y+GVr++k +g+W+AeIrd +   kr+r +lg+++ta+eAa a+++a+ +++g+
  XP_009783399.1 472 KYRGVRQRK-WGKWAAEIRDTR---KRTRTWLGTYDTAYEAALAYDKAAIEIRGA 522
                     8*******9.**********42...36*************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.48E-27114163No hitNo description
SMARTSM003808.2E-27115175IPR001471AP2/ERF domain
PROSITE profilePS5103221.074115176IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-25115165IPR001471AP2/ERF domain
SuperFamilySSF541714.18E-18115163IPR016177DNA-binding domain
PfamPF008472.1E-14115164IPR001471AP2/ERF domain
PRINTSPR003675.5E-11116127IPR001471AP2/ERF domain
PRINTSPR003675.5E-11138154IPR001471AP2/ERF domain
CDDcd000181.10E-29472527No hitNo description
SMARTSM003801.0E-32472535IPR001471AP2/ERF domain
SuperFamilySSF541712.88E-19472528IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.4E-27472527IPR001471AP2/ERF domain
PROSITE profilePS5103221.575472529IPR001471AP2/ERF domain
PfamPF008471.8E-13472521IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 553 aa     Download sequence    Send to blast
MTVSRELIQT MASQQEHQKK EAVEKPPEID VVEKSNNQVG ESSGTLPHLI RIHVTDRDAT  60
DSSSDEEKAG GEKSEQHGKT CVKEIIIANG KTEVIPKKKS KEKKDITVLQ GDVKKYRGVR  120
QRKWGKWAAE IRDARRKTRL WLGTFDTAEE AALAYDKAAI EIRAMASQEE HQKNEAVEKP  180
SEIDVVEKPS KIDLVEKFVN QVGESSVVLP RVVRIHLPDS SSDDEEKVEG EKSERHERTC  240
VKEIIIENGK TTVISKKMSR EKKDIKLLQE NAKKRIHVPE SDATDSSSDN EEKVEGEKSK  300
RHERMCLNET IIENGKTQVI SKKKSNEKKD VKLLQENAKK RICVPDCDAT DSSSGDEENV  360
EGEKSKRHEL TGAKEIVIEN GKTQVISKKK SKEKKHKKLL QENVKKRIHV LDHDTTDSSS  420
DDEVKAERKK SQQQEKSCAK EITFENGKTE VISKKKSKEK KDIMLLQGNV NKYRGVRQRK  480
WGKWAAEIRD TRKRTRTWLG TYDTAYEAAL AYDKAAIEIR GANALTNIIK PPPRKEINII  540
FKIPSLPTDD ARV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-17114527158ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009783399.10.0PREDICTED: uncharacterized protein LOC104232005 isoform X1
RefseqXP_016494296.10.0PREDICTED: uncharacterized protein LOC107813530 isoform X1
TrEMBLA0A1S4BZG60.0A0A1S4BZG6_TOBAC; uncharacterized protein LOC107813530 isoform X1
TrEMBLA0A1U7X8Y60.0A0A1U7X8Y6_NICSY; uncharacterized protein LOC104232005 isoform X1
STRINGXP_009783399.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.19e-19cytokinin response factor 4