PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009783352.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family TCP
Protein Properties Length: 313aa    MW: 35679.1 Da    PI: 7.1262
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009783352.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP115.75.9e-36211352104
             TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt............ssssasec..eaesssssa 82 
                     +gkkdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak ai++l ++            s ss ++   e++++++++
  XP_009783352.1  21 TGKKDRHSKVYTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKNAIDKLDELppwnpridaadgS-SSGNNIvlEQQQQQNQQ 114
                     79**************************************************************9999988877643.33333334444444444 PP

             TCP  83 snsssg...........kaaksaakskksqksa 104
                     ++ + +           +            +s+
  XP_009783352.1 115 QEFQLQrqleennpsgnN------------SSN 135
                     422222222222222221............111 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.3E-3121136IPR005333Transcription factor, TCP
PROSITE profilePS5136932.7852381IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MKRATGGEIV QVEGGHILRS TGKKDRHSKV YTAKGPRDRR VRLSAHTAIQ FYDVQDRLGY  60
DRPSKAVDWL IKKAKNAIDK LDELPPWNPR IDAADGSSSG NNIVLEQQQQ QNQQQEFQLQ  120
RQLEENNPSG NNSSNSYMMQ THTGGETQSL GDTMKSFFPM NSGTSLMNFQ NYPHEIMPRS  180
ASFQSEDLGL SLHSTTFHDQ NSNHRASSSH DHQTIFSSQN FETNYSRMAG WILPHHQQTL  240
YSQQPQGAVF PQREPLQSNF SQLIHAWEER PPMNHVHHQA EISNRHFISD FQIPARIHGE  300
HEEPSSASPN SHH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009783352.10.0PREDICTED: transcription factor TCP4-like isoform X1
SwissprotQ8LPR55e-55TCP4_ARATH; Transcription factor TCP4
TrEMBLG3BGV01e-138G3BGV0_SOLLC; TCP transcription factor 10
STRINGPGSC0003DMT4000243281e-136(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA66072234
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15030.32e-52TCP family protein