PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009783239.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family LBD
Protein Properties Length: 190aa    MW: 20621.2 Da    PI: 5.7817
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009783239.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26065.41.4e-20295198
          DUF260  1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92
                    +C++C+vlrr+C+++C+l+ ++     p +q +++ +v k+FG+s ++ +++a+pe++r+         A+ r+ +Pv Gavg++++++++++q+++
  XP_009783239.1  2 SCNGCRVLRRRCSDNCTLRACLdgiddPRAQGNATLFVSKFFGRSDLMAFISAVPENRRP---------ACGRTVNPVTGAVGLLSTGNWHVCQKAV 89
                    6*************************99******************************98.........89************************** PP

          DUF260 93 elallk 98
                    e++l++
  XP_009783239.1 90 ETVLVG 95
                    998876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089110.42198IPR004883Lateral organ boundaries, LOB
PfamPF031957.3E-17292IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MSCNGCRVLR RRCSDNCTLR ACLDGIDDPR AQGNATLFVS KFFGRSDLMA FISAVPENRR  60
PACGRTVNPV TGAVGLLSTG NWHVCQKAVE TVLVGGNLRP VFAGTLTPTA YMDETFESFR  120
CGGAWDIPNQ FSNKSGSFID GSDHTDTTDW VGLEKRWNTM SSIGSETELS DVSLGLDSGN  180
KEPKLLNLFV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009783239.11e-139PREDICTED: LOB domain-containing protein 38-like isoform X2
SwissprotQ9SN235e-47LBD38_ARATH; LOB domain-containing protein 38
TrEMBLM1BXU31e-103M1BXU3_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000553931e-102(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49940.13e-48LOB domain-containing protein 38