PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009782007.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family AP2
Protein Properties Length: 466aa    MW: 51444.9 Da    PI: 8.076
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009782007.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.37e-17144193155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  XP_009782007.1 144 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHTAARAYDRAAIKFRG 193
                     78*******************......55************************997 PP

2AP239.81.1e-12236286155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s+++GV+ +k  grW+A+   +     +k+++lg f+++ eAa+a+++a+ k +g
  XP_009782007.1 236 SKFRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSEVEAARAYDKAAIKTNG 286
                     79********.7******5553..2.26**********99**********98766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541718.5E-16144202IPR016177DNA-binding domain
PfamPF008476.9E-9144193IPR001471AP2/ERF domain
CDDcd000181.90E-23145203No hitNo description
SMARTSM003803.6E-32145207IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.8E-17145201IPR001471AP2/ERF domain
PROSITE profilePS5103217.662145201IPR001471AP2/ERF domain
PfamPF008478.5E-8236284IPR001471AP2/ERF domain
SuperFamilySSF541713.66E-16236295IPR016177DNA-binding domain
CDDcd000185.48E-24236296No hitNo description
PROSITE profilePS5103215.277237294IPR001471AP2/ERF domain
SMARTSM003807.2E-30237300IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.6E-15237294IPR001471AP2/ERF domain
PRINTSPR003671.6E-5238249IPR001471AP2/ERF domain
PRINTSPR003671.6E-5276296IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 466 aa     Download sequence    Send to blast
MLDLNVNVIY DENYIVDEKL PEGSVADHES GTSNSSSLRN AEATSSAGGD DDTCSTRAGN  60
LFAFNFDILK FGGVDATSRS NAFVTRQLFP VHDGELNRPG QTDRVNFSSG RSGFGDERTV  120
LQQQPQQEKP QVKKSRRGPR SRSSQYRGVT FYRRTGRWES HIWDCGKQVY LGGFDTAHTA  180
ARAYDRAAIK FRGVDADINF SISDYEEDMK QMKDLGKEEF VHLLRRHSNG FSRGSSKFRG  240
VTLHKCGRWE ARMGQFLGKK YIYLGLFDSE VEAARAYDKA AIKTNGREAV TNFEPSAYQG  300
ETISEPQKEG SQPDLDLNLG MSTSSSKEND KLGGSYYHPY DMQDATKSKM DKPGPVIVGS  360
SHLKGLPMTS KQAHLWSGAY SNFSPTYEGR ASDKRKDTGS SLGPSNWAMQ MPTQVDTAPV  420
SMFYTAASSG FLTPASAFIT SSASPVAPST NASQYYYQFS PHVPPP
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00615PBMTransfer from AT2G28550Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ5869540.0HQ586954.1 Solanum lycopersicum AP2 transcription factor SlAP2e mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009782007.10.0PREDICTED: AP2-like ethylene-responsive transcription factor TOE3 isoform X1
RefseqXP_009782008.10.0PREDICTED: AP2-like ethylene-responsive transcription factor TOE3 isoform X1
RefseqXP_009782009.10.0PREDICTED: AP2-like ethylene-responsive transcription factor TOE3 isoform X1
SwissprotQ9SK031e-105RAP27_ARATH; Ethylene-responsive transcription factor RAP2-7
TrEMBLA0A1U7WQ030.0A0A1U7WQ03_NICSY; AP2-like ethylene-responsive transcription factor TOE3 isoform X1
STRINGXP_009782007.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59124116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.31e-116related to AP2.7