PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009781596.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family LBD
Protein Properties Length: 215aa    MW: 23595.7 Da    PI: 8.6565
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009781596.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260124.93.8e-3981081100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                     +C aCk+lrrkCa+dC++apyf++eq p++fa++hk+FGasnv+kll ++p  +r +a+ +++yeA+ar++dPvyG+v++i++lqqq++ l+a+l
  XP_009781596.1   8 PCGACKFLRRKCAADCIFAPYFCSEQgPARFAAIHKVFGASNVSKLLLHVPVADRCEAVVTIAYEAQARIKDPVYGCVAHIFALQQQVAYLQAQL 102
                     7*************************99******************************************************************* PP

          DUF260  95 allkee 100
                      ++k++
  XP_009781596.1 103 MQVKAQ 108
                     999987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.7067109IPR004883Lateral organ boundaries, LOB
PfamPF031954.8E-388106IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010311Biological Processlateral root formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MASGTGSPCG ACKFLRRKCA ADCIFAPYFC SEQGPARFAA IHKVFGASNV SKLLLHVPVA  60
DRCEAVVTIA YEAQARIKDP VYGCVAHIFA LQQQVAYLQA QLMQVKAQMA QSLINNSRNS  120
YPQWPNNMAA SVGLMASSFP ANNNNNNNPR YTMNSNSSPQ SSLESVDHYS DGVNVQEIES  180
RDQVFYQAAY ATSRKRPSQT ELGELQALAL RMMKN
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00309DAPTransfer from AT2G42430Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009781596.11e-161PREDICTED: LOB domain-containing protein 16
RefseqXP_016439562.11e-161PREDICTED: LOB domain-containing protein 16-like
SwissprotQ9SLB71e-78LBD16_ARATH; LOB domain-containing protein 16
TrEMBLM1AL221e-116M1AL22_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000251351e-116(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42430.11e-61lateral organ boundaries-domain 16