PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009781057.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 376aa    MW: 42394.1 Da    PI: 6.5171
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009781057.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.55.3e-21178227255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     +y+GVr+++ +g+W+AeIrdp+    + +r++lg+f+tae Aa+a+++a++k++g
  XP_009781057.1 178 RYRGVRQRP-WGKWAAEIRDPY----KaTRVWLGTFDTAEAAARAYDEAALKFRG 227
                     7********.**********76....35*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003803.6E-39178241IPR001471AP2/ERF domain
PfamPF008474.3E-14178227IPR001471AP2/ERF domain
SuperFamilySSF541715.04E-23178236IPR016177DNA-binding domain
PROSITE profilePS5103225.673178235IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.2E-33178236IPR001471AP2/ERF domain
PRINTSPR003676.3E-12179190IPR001471AP2/ERF domain
CDDcd000184.65E-16186237No hitNo description
PRINTSPR003676.3E-12201217IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MCIYKVANSR DKISNRRRHE DRDRDDNYNV LESMFSGNIN REQEMSVMVS ALKHVVAGED  60
RLNHQILTDE NGAAENNLGS GFSSVSWGVG EKRGREQRQS SQQFLHIGSS DMRSSGGEGT  120
SIRTITSSTP TTEATFIYTS TNDHQNSSSD QSNGDNNNNN NNNNNNNNNN NNSQSRRRYR  180
GVRQRPWGKW AAEIRDPYKA TRVWLGTFDT AEAAARAYDE AALKFRGSKA KLNFPENVKL  240
LPSPVLSDSP NTLYSVSSSP DPIVYTSLYR PNFIEYPLRD DKPIVHTSQY RSNFIERPQT  300
DEPILHTSHH QALNNSADLN DQTFTNDDEF HRLHLPYFPN MFLSPIQPQV HIQPNASQSE  360
LVTEALAPPS SSSAPE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-23177238163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT9904892e-51CT990489.3 S.lycopersicum DNA sequence from clone LE_HBa-20F17 on chromosome 4, complete sequence.
GenBankHG9754432e-51HG975443.1 Solanum pennellii chromosome ch04, complete genome.
GenBankHG9755162e-51HG975516.1 Solanum lycopersicum chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009781057.10.0PREDICTED: ethylene-responsive transcription factor ERF036-like
TrEMBLA0A1U7WM690.0A0A1U7WM69_NICSY; ethylene-responsive transcription factor ERF036-like
STRINGXP_009781057.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64750.14e-21ERF family protein