PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009779769.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family LBD
Protein Properties Length: 247aa    MW: 26967.9 Da    PI: 6.2179
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009779769.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601231.5e-38391401101
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                     +C aCk+lrrkC ++C++ap++ ++q +++fa+vhk+FGasnv+kll ++p ++r+da+ +++yeA+ar++dPvyG+v++il+lqqq+++l+ael
  XP_009779769.1  39 PCGACKFLRRKCISGCIFAPHYGSDQgAARFAAVHKVFGASNVSKLLLHIPANRRHDAVVTITYEAQARLSDPVYGCVSTILALQQQVASLQAEL 133
                     7***********************9989******************************************************************* PP

          DUF260  95 allkeel 101
                     a+++++l
  XP_009779769.1 134 AVVQTQL 140
                     **99885 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.55538140IPR004883Lateral organ boundaries, LOB
PfamPF031959.1E-3839137IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:1900150Biological Processregulation of defense response to fungus
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MDEPPSDGTS ENRRKGPGKR ATGAVEPLAS AILPASTAPC GACKFLRRKC ISGCIFAPHY  60
GSDQGAARFA AVHKVFGASN VSKLLLHIPA NRRHDAVVTI TYEAQARLSD PVYGCVSTIL  120
ALQQQVASLQ AELAVVQTQL INNRYAMENA LQTSQQQHHL QQQLHQEHHI AILQPTYSDN  180
SSVSNNNLIN NINSANTFNS TAFDQLPDDT CATTVPNNNS PSFDPVHQED EEEEESHPIA  240
FTNQMFH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009779769.10.0PREDICTED: LOB domain-containing protein 20
RefseqXP_016440903.10.0PREDICTED: LOB domain-containing protein 20-like
SwissprotQ9SRV38e-74LBD20_ARATH; LOB domain-containing protein 20
TrEMBLM1C1R41e-101M1C1R4_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000578291e-101(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03760.16e-60LOB domain-containing protein 20