PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009778338.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family LBD
Protein Properties Length: 164aa    MW: 18113.5 Da    PI: 7.7672
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009778338.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260143.18.6e-4510108199
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                     +CaaCk+lrrkC ++C++apyfp e+p+kfanvhk+FGasnv+kll++l +++reda+++l+yeAear+rdPvyG+vg i+ lq+q+e+l++el+
  XP_009778338.1  10 PCAACKFLRRKCLPGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLPHQREDAVNTLAYEAEARVRDPVYGCVGAITFLQRQVERLQKELD 104
                     7*********************************************************************************************9 PP

          DUF260  96 llke 99 
                     ++++
  XP_009778338.1 105 AANA 108
                     9876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089127.6929110IPR004883Lateral organ boundaries, LOB
PfamPF031951.5E-4310107IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010199Biological Processorgan boundary specification between lateral organs and the meristem
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    Send to blast
MASSSCYNSP CAACKFLRRK CLPGCIFAPY FPPEEPQKFA NVHKIFGASN VTKLLNELLP  60
HQREDAVNTL AYEAEARVRD PVYGCVGAIT FLQRQVERLQ KELDAANADL IRYASCNDVS  120
APLVAPQRGY ELGGFHQTHN FPFPYPPSWN DQSPSGGHGR GGNI
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00581DAPTransfer from AT5G63090Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009778337.11e-121PREDICTED: protein LATERAL ORGAN BOUNDARIES-like
RefseqXP_009778338.11e-121PREDICTED: protein LATERAL ORGAN BOUNDARIES-like
RefseqXP_016510977.11e-121PREDICTED: protein LATERAL ORGAN BOUNDARIES-like
SwissprotQ9FML44e-72LOB_ARATH; Protein LATERAL ORGAN BOUNDARIES
TrEMBLB9IEW98e-83B9IEW9_POPTR; Uncharacterized protein
STRINGPOPTR_0015s09370.12e-82(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63090.43e-73LBD family protein