PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009777707.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family LBD
Protein Properties Length: 245aa    MW: 27301.1 Da    PI: 6.7616
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009777707.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26091.88.1e-294105197
          DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                     +C++C+vlr++C+++C l+p++     p++q++++ +++k++G++ + +l+++ p++ r+++++sl+yeA+ r+ +Pv+G+vg++ ++++  +q+
  XP_009777707.1   4 SCNGCRVLRKGCSENCSLRPCLqwirsPDSQANATVFLAKFYGRAGLFNLINSGPDHLRPAIFRSLLYEACGRIINPVHGSVGLMCSGNWTRCQE 98 
                     6********************************************************************************************** PP

          DUF260  91 kaelall 97 
                     ++e +l 
  XP_009777707.1  99 AVESVLK 105
                     9998776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089116.023109IPR004883Lateral organ boundaries, LOB
PfamPF031953.5E-234102IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MRMSCNGCRV LRKGCSENCS LRPCLQWIRS PDSQANATVF LAKFYGRAGL FNLINSGPDH  60
LRPAIFRSLL YEACGRIINP VHGSVGLMCS GNWTRCQEAV ESVLKGSTVI QIPINDDNNT  120
DNQVSLQIMP LKGCDIRHIS KNNSTDIHQV VKTRNRFKRK AKVETTASEY MINEPGPLKF  180
SITGWDFDNH MEEEDELKRA PSHDSFSVET VEPSLVNRVE PVLPVKLEED GDVGLELTLG  240
LTSPA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009777707.10.0PREDICTED: LOB domain-containing protein 40-like
SwissprotQ9M8864e-73LBD41_ARATH; LOB domain-containing protein 41
TrEMBLM1B5R61e-119M1B5R6_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000377111e-119(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8862494
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.13e-74LOB domain-containing protein 41