PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

Plant Transcription Factor Database

v4.0

Previous version: v1.0, v2.0, v3.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009776936.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bZIP

Protein Properties

Length: 363aa MW: 41301.1 Da PI: 7.5429

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009776936.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	31.9	2.9e-10	80	109	4	33
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLee 33 k++rr+++NReAAr+sR RKka++++Le+ XP_009776936.1 80 EKVQRRLAQNREAARKSRMRKKAYVQQLET 109 599*************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	6.3E-6	77	137	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	2.1E-9	77	121	No hit	No description
PROSITE profile	PS50217	9.117	79	123	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	3.19E-7	81	116	No hit	No description
Pfam	PF00170	3.7E-7	81	111	IPR004827	Basic-leucine zipper domain
PROSITE pattern	PS00036	0	84	99	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	3.1E-28	167	240	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 363 aa Download sequence Send to blast
MNMTSPTTQF APTRRMGIYE PFHQMSVWED AFRGDIMPSS DPCMVSQPND RPDDKSGYTS 60 GEQHMPSGSG DNQAPRSTSE KVQRRLAQNR EAARKSRMRK KAYVQQLETS RLKLAQLELE 120 LERARQQGLY MLGSNSNMGL LGTINPGIAA FEMEYSHWVE EQQKKNAELR SILQSPVSEM 180 ELQLLVENVL SHYFNLFRMK ADAAKADVFY LMSGMWRTTV ERFFLWIGGF KPSDLINVVM 240 PQLEPLTDQQ IIKVCNLRHC CQQAEDALTQ GMDKLQQTLA QSILNMTTGA GNYSSQMVSS 300 MENLEALESF VNQADHLRQQ TLQQMSIILT TRQAARGLLA FGEYLQRLRA LSSLWAARPR 360 EPT

Sequence ? help Back to Top

Protein Sequence Length: 363 aa Download sequence Send to blast

MNMTSPTTQF APTRRMGIYE PFHQMSVWED AFRGDIMPSS DPCMVSQPND RPDDKSGYTS  60
GEQHMPSGSG DNQAPRSTSE KVQRRLAQNR EAARKSRMRK KAYVQQLETS RLKLAQLELE  120
LERARQQGLY MLGSNSNMGL LGTINPGIAA FEMEYSHWVE EQQKKNAELR SILQSPVSEM  180
ELQLLVENVL SHYFNLFRMK ADAAKADVFY LMSGMWRTTV ERFFLWIGGF KPSDLINVVM  240
PQLEPLTDQQ IIKVCNLRHC CQQAEDALTQ GMDKLQQTLA QSILNMTTGA GNYSSQMVSS  300
MENLEALESF VNQADHLRQQ TLQQMSIILT TRQAARGLLA FGEYLQRLRA LSSLWAARPR  360
EPT

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT014216	0.0	BT014216.1 Lycopersicon esculentum clone 133394F, mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009776929.1	0.0	PREDICTED: transcription factor TGA1-like
Refseq	XP_009776936.1	0.0	PREDICTED: transcription factor TGA1-like
Refseq	XP_016467889.1	0.0	PREDICTED: transcription factor TGA1-like
Refseq	XP_016467890.1	0.0	PREDICTED: transcription factor TGA1-like
Swissprot	Q39237	1e-157	TGA1_ARATH; Transcription factor TGA1
TrEMBL	K4BTN3	0.0	K4BTN3_SOLLC; Uncharacterized protein
STRING	Solyc04g072460.2.1	0.0	(Solanum lycopersicum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65210.5	1e-144	bZIP family protein