PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009775261.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family FAR1
Protein Properties Length: 788aa    MW: 90113.6 Da    PI: 7.5059
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009775261.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR194.51.3e-2980174291
            FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.....tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                     fYn YA++vGFs+r+s s++s+r+g i++r fvC +eg+r e++k        + +r+raetr+gCka+l+vk ++ g+w+v+ +++eHnHel+p
  XP_009775261.1  80 FYNLYARRVGFSTRVSMSRRSRRDGAIIQRSFVCAREGFRVEKEKPgrdggGARIKRPRAETRVGCKAMLVVKIQNLGRWVVSGFVKEHNHELVP 174
                     9*****************************************99999999999999*************************************86 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.6E-2780174IPR004330FAR1 DNA binding domain
PfamPF105518.4E-32295387IPR018289MULE transposase domain
PfamPF044344.4E-10564609IPR007527Zinc finger, SWIM-type
PROSITE profilePS5096610.756575611IPR007527Zinc finger, SWIM-type
SMARTSM005758.5E-6586613IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 788 aa     Download sequence    Send to blast
MELEPLGIRN DVIEFDMFGL GVGDETIDIE HPIEGGENNQ LLEPFDGIVS GRISGEVYGD  60
MNLEPYEGME FESEEAAKAF YNLYARRVGF STRVSMSRRS RRDGAIIQRS FVCAREGFRV  120
EKEKPGRDGG GARIKRPRAE TRVGCKAMLV VKIQNLGRWV VSGFVKEHNH ELVPPDKVHC  180
LRSHRHVSGP AKSLIDTLQG AGIGPSGIMS ALIKEYGGIR SVGFTERDCR NYMRSSKQRT  240
LGGDPQTLLD YLKQKHLENP SFFYAVQGDE DHCMSNIFWA DPKARTNFSY FGDTVTFDTT  300
YRSNRYRLPF APFTGVNHHG QPVLFGCALL INESKASFSW LFSTWLMAMC GKPPVSITTD  360
HDRVIRLAVR QVFPEARHRF CKWHIFKECQ EKLSHVLSEH INFEAEFHKC VSLTESIEEF  420
EACWFTLIDK YDLGENEWLQ AIYADRKQWV PVYLRDTFFA EMSIMQHSDS MNSYFDGYVN  480
ASTTLQQFIK LYEKAVESRY EKEVKADYDT MHIGPALKTP SPMEKQAAEI YTRKLFIKFQ  540
EELVETLTFL ATKVDDNEAT TVFQVAKFGE SHKSYLVHYN VREIKASCSC QMFEFSSLLC  600
RHILTVFRVT NVLTLPPCYV LKRWTRNAKS GLMLEEQTCN LLNSYQESFN DRYNNLQREA  660
FKYVDEGAKD EECYQVAMDA LREAANKVAI FNKTGAGVSN SGGTCKGVFA TLESRVNNPF  720
EARQLSGGPS TPVDEQDKKI QKLTRKLERA RQKCELYRTN LMTVLKDIEQ QKLQLTVKVQ  780
SIKLGMKG
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009775261.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
SwissprotQ9SZL80.0FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A1U7WDD40.0A0A1U7WDD4_NICSY; protein FAR1-RELATED SEQUENCE 5-like
STRINGXP_009775261.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43522109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.10.0FAR1-related sequence 5
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]