PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009771974.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family RAV
Protein Properties Length: 329aa    MW: 38429.2 Da    PI: 7.5277
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009771974.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP231.54.5e-104795155
             AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    s++kGV     +g W A+I+       ++r++lg+f ++ eAa a++ a+ +l+ 
  XP_009771974.1 47 SRFKGVV-GQHNGHWGAQIYTN-----QQRIWLGTFKSETEAAMAYDSAAIRLRS 95
                    6899996.4448******8883.....5**********99************985 PP

2B398.54e-31170257186
                     EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                     f+k+ltpsdv+k++rlv+pkk+a+++  ++++  +++l+++d+s r+W+++++y+k+s+++v+tkGW++Fvk++gL+++D++vF l +
  XP_009771974.1 170 FQKELTPSDVGKLNRLVIPKKYASKYfpQIQEVPDVELVFYDTSRRQWKFRYCYWKSSQSFVFTKGWNRFVKDKGLRANDTIVFNLCE 257
                     99**************************88888999************************************************9764 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.18E-1347104IPR016177DNA-binding domain
CDDcd000182.77E-2147105No hitNo description
PfamPF008471.0E-54794IPR001471AP2/ERF domain
PROSITE profilePS5103216.23948103IPR001471AP2/ERF domain
SMARTSM003804.5E-1848109IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.5E-1648103IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.102.9E-34166255IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.15E-30168258IPR015300DNA-binding pseudobarrel domain
CDDcd100179.82E-29169255No hitNo description
PfamPF023623.7E-27170257IPR003340B3 DNA binding domain
SMARTSM010193.0E-25170264IPR003340B3 DNA binding domain
PROSITE profilePS5086314.395170277IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MEEETNIMMS STTTYLTGDC DSSSTNNMQS KKHKRNAYTR KACISGSRFK GVVGQHNGHW  60
GAQIYTNQQR IWLGTFKSET EAAMAYDSAA IRLRSQDSHR NLPWTNSTVQ EPNFQRQFST  120
EDILRMIKEG SYPTKFDEYL KEKYEECHPF NTLPVAELKA NEGFSYKQLF QKELTPSDVG  180
KLNRLVIPKK YASKYFPQIQ EVPDVELVFY DTSRRQWKFR YCYWKSSQSF VFTKGWNRFV  240
KDKGLRANDT IVFNLCEYKT GPKEISADFV IDVLKGVEVL PEPKVEIEER MKTQSTDDHA  300
VEPVWLFGVQ IGWSTNNDDD DYMNRHFFI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A8e-2816925413101DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009771974.10.0PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g51120
RefseqXP_016492322.10.0PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g51120-like
SwissprotQ9C6881e-89RAVL3_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g51120
TrEMBLA0A1S4BTX10.0A0A1S4BTX1_TOBAC; AP2/ERF and B3 domain-containing transcription factor At1g51120-like
TrEMBLA0A1U7WBE00.0A0A1U7WBE0_NICSY; AP2/ERF and B3 domain-containing transcription factor At1g51120
STRINGXP_009771974.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52522339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51120.15e-92RAV family protein