PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009769304.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 290aa    MW: 30836.4 Da    PI: 7.8086
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009769304.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2673.7e-212574255
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    +y+GVr ++ +gr++AeIrdps+   + r++lg+f+taeeAa+a++aa+++++g
  XP_009769304.1 25 HYRGVRKRP-WGRYAAEIRDPSK---KSRVWLGTFDTAEEAARAYDAAAREFRG 74
                    6********.**********965...6*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.01E-202582No hitNo description
Gene3DG3DSA:3.30.730.102.8E-332582IPR001471AP2/ERF domain
PROSITE profilePS5103224.4872582IPR001471AP2/ERF domain
SMARTSM003807.7E-422588IPR001471AP2/ERF domain
PfamPF008472.5E-142574IPR001471AP2/ERF domain
SuperFamilySSF541714.32E-232583IPR016177DNA-binding domain
PRINTSPR003672.1E-112637IPR001471AP2/ERF domain
PRINTSPR003672.1E-114864IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MAMKEKLNGG LKGGNVKTNG VKEVHYRGVR KRPWGRYAAE IRDPSKKSRV WLGTFDTAEE  60
AARAYDAAAR EFRGPKAKTN FPLPSENQCP SNSSGPTESS SGETGVHAPH APSELDLTRP  120
LGTVAVGVDH GGCKSEVGSV RNGFPIFHHQ PVMGALTSDN SGLAESSIGE TGVHAPLELD  180
LTRHLGAVGE GGNHVRNGFP IFHQQPTVAV LPNGQPILLF DNNFVPTGVL NRPKPYRFEP  240
VAVEFNGVSG RVVHSDSSSS TAANENYYGG GGGARRELNL DLNLAPPMEA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-212583564ATERF1
3gcc_A1e-212583564ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional repressor and may regulate other AtERFs (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Strongly and quickly induced by ethylene. {ECO:0000269|PubMed:10945353}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ6170312e-34AJ617031.1 Nicotiana plumbaginifolia cDNA-AFLP fragment, clone Np193.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009769304.10.0PREDICTED: ethylene-responsive transcription factor 4-like
SwissprotQ9LW491e-67ERF4_NICSY; Ethylene-responsive transcription factor 4
TrEMBLA0A1U7W3U80.0A0A1U7W3U8_NICSY; ethylene-responsive transcription factor 4-like
STRINGXP_009769304.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.16e-23erf domain protein 9