PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009766732.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family LBD
Protein Properties Length: 182aa    MW: 20111.5 Da    PI: 6.895
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009766732.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260135.32.3e-4211110199
          DUF260   1 aCaaCkvlrrkCakd.CvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                     +CaaCk+lrrkC ++ C++apyfp e+p kfanvhk+FGasnv+kll+++++++reda++sl+yeAear++dPvyG+vg i+ lq+q+ +l++el
  XP_009766732.1  11 PCAACKFLRRKCLPGnCIFAPYFPPEEPTKFANVHKIFGASNVSKLLNEIQPHQREDAVNSLAYEAEARMKDPVYGCVGAISVLQRQVIRLQKEL 105
                     7***********8855******************************************************************************* PP

          DUF260  95 allke 99 
                     +++++
  XP_009766732.1 106 DATNA 110
                     99876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.08610112IPR004883Lateral organ boundaries, LOB
PfamPF031959.5E-4211109IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MASSSSYSNP PCAACKFLRR KCLPGNCIFA PYFPPEEPTK FANVHKIFGA SNVSKLLNEI  60
QPHQREDAVN SLAYEAEARM KDPVYGCVGA ISVLQRQVIR LQKELDATNA DLMRYINPSG  120
GIMNHQQRSN LNYGRITGPV DGTTTGFDQN YGFCIPNYSP NTWNNTTISG NHNPEGDDDS  180
SM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009766717.11e-137PREDICTED: LOB domain-containing protein 25-like isoform X1
RefseqXP_009766723.11e-137PREDICTED: LOB domain-containing protein 25-like isoform X1
RefseqXP_016507963.11e-137PREDICTED: LOB domain-containing protein 25-like isoform X1
SwissprotQ8L8Q33e-68LBD25_ARATH; LOB domain-containing protein 25
TrEMBLM1AY899e-84M1AY89_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000328753e-83(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27650.12e-69LOB domain-containing protein 25