PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009766717.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family LBD
Protein Properties Length: 196aa    MW: 21756.3 Da    PI: 7.1475
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009766717.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601352.7e-4225124199
          DUF260   1 aCaaCkvlrrkCakd.CvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                     +CaaCk+lrrkC ++ C++apyfp e+p kfanvhk+FGasnv+kll+++++++reda++sl+yeAear++dPvyG+vg i+ lq+q+ +l++el
  XP_009766717.1  25 PCAACKFLRRKCLPGnCIFAPYFPPEEPTKFANVHKIFGASNVSKLLNEIQPHQREDAVNSLAYEAEARMKDPVYGCVGAISVLQRQVIRLQKEL 119
                     7***********8855******************************************************************************* PP

          DUF260  95 allke 99 
                     +++++
  XP_009766717.1 120 DATNA 124
                     99876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.08624126IPR004883Lateral organ boundaries, LOB
PfamPF031951.2E-4125123IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MNHSSSNHLH RTEIMASSSS YSNPPCAACK FLRRKCLPGN CIFAPYFPPE EPTKFANVHK  60
IFGASNVSKL LNEIQPHQRE DAVNSLAYEA EARMKDPVYG CVGAISVLQR QVIRLQKELD  120
ATNADLMRYI NPSGGIMNHQ QRSNLNYGRI TGPVDGTTTG FDQNYGFCIP NYSPNTWNNT  180
TISGNHNPEG DDDSSM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009766717.11e-148PREDICTED: LOB domain-containing protein 25-like isoform X1
RefseqXP_009766723.11e-148PREDICTED: LOB domain-containing protein 25-like isoform X1
RefseqXP_016507963.11e-148PREDICTED: LOB domain-containing protein 25-like isoform X1
SwissprotQ8L8Q34e-68LBD25_ARATH; LOB domain-containing protein 25
TrEMBLM1AY892e-83M1AY89_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000328755e-83(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27650.12e-69LOB domain-containing protein 25