PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009761563.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family FAR1
Protein Properties Length: 856aa    MW: 96989.8 Da    PI: 6.5128
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009761563.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR151.92.5e-1665140190
            FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                     +f+++YA++vGF++ + + ++ k +g i++ ++ Cs+e  r+++ ++              C+a+l++++++++ w+vtk++++HnH+++
  XP_009761563.1  65 NFFDAYARRVGFTIHVGQYSRDKPDGPIISWDYSCSREVVRRKNIES--------------CNAMLRIERKNSDSWVVTKFVEDHNHSIV 140
                     69***************************************998877..............**************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.4E-1365140IPR004330FAR1 DNA binding domain
PfamPF105513.1E-29275367IPR018289MULE transposase domain
PfamPF044341.6E-10552586IPR007527Zinc finger, SWIM-type
PROSITE profilePS5096611.115552588IPR007527Zinc finger, SWIM-type
SMARTSM005754.2E-8563590IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 856 aa     Download sequence    Send to blast
MNIEVIDVEG QKRQKTGEIA AELIHNSKQG LPENFTERDA IVEVDDGEEK PYVGMEFQTE  60
EAAKNFFDAY ARRVGFTIHV GQYSRDKPDG PIISWDYSCS REVVRRKNIE SCNAMLRIER  120
KNSDSWVVTK FVEDHNHSIV NPSKVHYLQP RKHFSGASKT VGETPGAPTV IMVPVDGNHV  180
SVSSNEGVKD ASPVESNRVT KNFSPVIPIM FIQPCSRKRT LGRDAHNLLD YFKKMQAENP  240
GFYYAIQLDD ENRMTNAFWA DARSRIAYSH FGDAVIFDTM YRPNQFQVPF APFTGVNHHG  300
QIVLFGCALL LDESESSFTW LFRTWLSAMN NHPPVSITTD QDRAIKAAVN QVLPCTRHCI  360
CKWHILREGQ ERLAHIYLAH PSFYGELYSC INYSETIEDF ELSWASILDR YDLRKNEWLQ  420
AVYNARNQWA PVYFRDTFFA ALPSNQSVTS FFDGYVNQQT TLPMFFKQYE RALESSLERE  480
IQSDFDTNCT TPMLKTPSPM EQQASNLYTK KVFAKFQEEL VETFAYTANK IDGDGRLSKF  540
RVAKYEQDDK AYIVMLNLAE MKASCSCHMF EYSGILCRHI LTVFTVTNVL TVPSHYIVRR  600
WTRNAKVGQG SEEDIVKTGI NSLSSRFNHL CLEALRYAEE GAVSVETYDA AISALRDGLS  660
KISIVAKNIV RPPSSQGSGS TQDESIKRTL ATSNTAPSLW PWQDTLPHHF NLNDVDLPAG  720
DLNQPTMTPV AINRDGGLVD NVVVYTCFKS MTWVIENTTP AIKVAVINLK LQDYGKSPAG  780
ETEVQFRVTR VTLEPMLKSM GYISQQLSLP ANRVAVINLK LQDTKTPSGE TEVKFQVSTD  840
TLGSMLRSMA YIREQL
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754400.0HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009761563.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 3-like
RefseqXP_009761564.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 3-like
RefseqXP_009761565.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 3-like
RefseqXP_009761566.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 3-like
RefseqXP_009761567.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 3-like
RefseqXP_009761568.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 3-like
RefseqXP_009761570.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 3-like
RefseqXP_009761571.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 3-like
SwissprotQ9ZVC90.0FRS3_ARATH; Protein FAR1-RELATED SEQUENCE 3
TrEMBLA0A1U7VI920.0A0A1U7VI92_NICSY; protein FAR1-RELATED SEQUENCE 3-like
STRINGXP_009761563.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43522109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27110.20.0FAR1-related sequence 3
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]